Factsheet for Os10t0501000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0501300-01	Rice	mitochondrion	75.17	66.08
Os10t0501200-00	Rice	mitochondrion	89.14	64.22
TraesCS1B01G188200.1	Wheat	mitochondrion	56.1	51.42
TraesCS1D01G166700.1	Wheat	mitochondrion	55.65	50.71
OQU91552	Sorghum	mitochondrion	55.21	48.82
Zm00001d032543_P001	Maize	mitochondrion	55.65	48.55
TraesCS1A01G168700.1	Wheat	mitochondrion	55.65	42.98
GSMUA_Achr5P20750_001	Banana	mitochondrion	39.25	32.42
CDY35213	Canola	cytosol	2.88	31.71
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	32.82	29.54
PGSC0003DMT400058755	Potato	cytosol	25.06	28.61
KRH22399	Soybean	cytosol	29.49	27.94
AT2G20710.1	Thale cress	mitochondrion	29.93	27.55
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	27.72	27.53
KRH26940	Soybean	cytosol	29.93	27.22
Bra036673.1-P	Field mustard	mitochondrion	28.82	27.2
CDY39781	Canola	mitochondrion	28.82	27.2
CDY03299	Canola	mitochondrion	28.38	27.06
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	28.6	26.99
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	28.16	25.76
Os07t0598500-01	Rice	mitochondrion	28.82	25.69
CDY35212	Canola	mitochondrion	15.96	25.62
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	28.16	25.5
CDY27645	Canola	mitochondrion	14.63	25.48
PGSC0003DMT400047256	Potato	extracellular	17.96	25.08
Os04t0544400-00	Rice	plastid	28.38	25.05
Solyc07g054100.1.1	Tomato	cytosol	17.52	24.46
CDY00734	Canola	mitochondrion	9.53	24.29
CDY71968	Canola	plastid	15.08	23.29
CDY65573	Canola	mitochondrion	19.07	23.24
Os01t0301700-01	Rice	mitochondrion	25.72	23.02
Os12t0527900-01	Rice	mitochondrion	26.16	22.96
Bra011054.1-P	Field mustard	mitochondrion	17.29	22.87
Os01t0301000-01	Rice	mitochondrion	25.94	22.41
AT1G28020.1	Thale cress	cytosol, plastid	23.95	21.86
Os04t0320200-01	Rice	mitochondrion	25.28	21.76
AT1G43010.1	Thale cress	mitochondrion	12.2	21.4
Os02t0796400-00	Rice	mitochondrion	24.39	21.28
Os01t0301500-01	Rice	cytosol, mitochondrion	22.39	20.87
AT3G11380.1	Thale cress	mitochondrion	24.17	20.15
AT3G11350.1	Thale cress	mitochondrion	15.52	19.5
CDY05786	Canola	plastid	20.18	18.76
Os04t0450200-01	Rice	cytosol	11.97	18.49
Bra036496.1-P	Field mustard	plastid	19.73	18.35
CDY31943	Canola	plastid	19.73	18.35
CDY48421	Canola	mitochondrion	15.96	17.43
Bra032862.1-P	Field mustard	mitochondrion	14.63	17.41
Bra032863.1-P	Field mustard	mitochondrion	15.08	17.0
CDY27647	Canola	mitochondrion	15.3	16.95
Os12t0170100-01	Rice	mitochondrion	22.39	16.53
AT1G28000.1	Thale cress	mitochondrion	14.19	16.49
Os01t0280400-00	Rice	mitochondrion	21.95	16.2
Bra032865.1-P	Field mustard	cytosol	19.51	15.33
CDY53325	Canola	mitochondrion	23.5	15.19
CDY53324	Canola	mitochondrion, plastid	24.17	14.91
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.17	14.55
CDX73880	Canola	mitochondrion	15.74	14.17
AT2G20720.1	Thale cress	cytosol	8.43	12.71
Bra032866.1-P	Field mustard	mitochondrion	16.19	11.44
CDY66759	Canola	cytosol	17.74	10.71
Os07t0222700-01	Rice	mitochondrion	2.66	6.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:BAF26897.1	ProteinID:BAT11526.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os10g0501000	EnsemblPlants:Os10t0501000-01	PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF625	InterPro:Pentatricopeptide_repeat	UniProt:Q0IWL8	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0000DD9A27	SEG:seg	:	:	:	:

Description

pentatricopeptide repeat motif containing gene 8, PPR motif-containing gene 8Pentatricopeptide repeat domain containing protein. (Os10t0501000-01)

Coordinates

chr10:+:19104084..19105701

Molecular Weight (calculated)

50763.7 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.324

Length

451 amino acids

Sequence
(BLAST)

001: VFLRGGGLLR RVAVEEAVSP SPPPPPPGKP PPPRSVAAEE RASPSPPPPR RKKDSLFRRV AAAADPRLPL SPVLEQWCLA EERHVAKPEV QSIIKYLCRR
101: RRFSQALQLS MWMTERLHLH LSPGDVANRL ELITKVYGLD RAVEYFDSMP DQLKQQQCYG SLLKCYAEAN CVEKAEELFE KMRGMGMASS YAYNVMMRLY
201: LQNGQVERVH SMHQAMEESG IVPDVSTTHT LVAVLRKKKT LVAAYVVAED IKAIENVLEK ANSCNSMYMC RIGVLLKMND MVGAEKAYEE WESKHVYHDS
301: RLINLLVDAY CKEGLMDKAE ALVDQFIKKG RMPFANTCYK LAGGYFKVGQ VSKAADLTKK ALASASNEWI PDLTNVLMSL NYFAEQKNVE AAEEMMSLLQ
401: RLVTPTRDIY HGLLKTYVNA GKPVSDLLHR MKKDGMEADE ETEKILAGEV H

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.