Factsheet for Solyc02g078330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	93.17	88.49
Solyc07g054100.1.1	Tomato	cytosol	23.13	32.51
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	35.02	32.25
OQU91552	Sorghum	mitochondrion	35.24	31.37
Zm00001d032543_P001	Maize	mitochondrion	35.68	31.33
Os10t0501300-01	Rice	mitochondrion	33.92	30.02
TraesCS1B01G188200.1	Wheat	mitochondrion	32.16	29.67
TraesCS1D01G166700.1	Wheat	mitochondrion	32.16	29.49
GSMUA_Achr5P20750_001	Banana	mitochondrion	35.24	29.3
Os10t0501000-01	Rice	cytosol	27.53	27.72
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	28.41	26.27
Solyc07g063220.2.1	Tomato	plastid	31.94	26.13
Solyc01g089870.2.1	Tomato	nucleus	30.84	25.69
TraesCS1A01G168700.1	Wheat	mitochondrion	33.04	25.68
Solyc11g006380.1.1	Tomato	cytosol	27.75	25.61
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	26.21	24.54
Solyc01g081320.2.1	Tomato	plastid	27.53	24.13
Os10t0501200-00	Rice	mitochondrion	32.82	23.8
Solyc01g100580.2.1	Tomato	mitochondrion	25.11	23.65
Solyc06g005140.2.1	Tomato	mitochondrion	26.87	23.46
Solyc10g047370.1.1	Tomato	mitochondrion	20.26	23.06
Solyc06g071900.2.1	Tomato	mitochondrion	20.7	17.57
Solyc12g020050.1.1	Tomato	plastid	23.13	16.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B957
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1625	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc02g078330.2	EnsemblPlants:Solyc02g078330.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027680DE

Description

No Description!

Coordinates

chr2:-:43057129..43060323

Molecular Weight (calculated)

52531.7 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.353

Length

454 amino acids

Sequence
(BLAST)

001: MINRFYGTTS TKYKKRDWVF ARIAPLGSPD MSMVPVLEQW VEEGKTVAKG ELQWIIKRLN SYKRYKHALE VSHWMTDRRY LPLQVADVAE RINLVYKVKG
101: LEEVEKYFNS ISQILRRPEV YTALLNCYTN EKSVGKAEAI MQQLRDMGFA KGTLCYNHMM NLYCKTGTWE KMDKLMNEME QKGVNFDEFT LTIRLTAYAT
201: AGDSEGMDKI LAMMESDKQI ILHWDTYSIA AELYLKVGLV EKALELLSRL DSMILTRKKS NGAYNDLLKL YAEAGKKEEV HRVWDLYKQN MRILNKGYIS
301: VMSALMKFGD TERVEKIFEE WESEALSYDF RVPDVLIRSY CRNGLLGKAK ALMDKGISKG GVPWVTTWCH LANGYIHEDL VPEAVEALKK AISICPPNYK
401: PSKETLATCV NYWEKQGNVD NAADFVRSLE QDHIFSPVFR DKLLCFIKEE KLQT

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.