Factsheet for Solyc01g081320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004477	Potato	plastid	84.94	91.48
VIT_18s0001g07000.t01	Wine grape	mitochondrion	52.9	54.58
KRH52991	Soybean	mitochondrion	47.49	49.6
CDY19721	Canola	mitochondrion	44.4	48.22
CDX99984	Canola	mitochondrion	44.4	48.12
Bra036629.1-P	Field mustard	mitochondrion	44.21	48.01
CDY25035	Canola	mitochondrion, plastid	43.82	46.33
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	43.82	46.23
Bra020588.1-P	Field mustard	mitochondrion	43.24	45.62
KRH62276	Soybean	mitochondrion	48.26	43.48
CDY05574	Canola	mitochondrion	43.63	43.13
GSMUA_Achr7P12830_001	Banana	mitochondrion	45.17	43.01
Os02t0796400-00	Rice	mitochondrion	42.86	42.94
TraesCS6B01G391300.1	Wheat	mitochondrion	41.89	42.05
TraesCS6A01G358600.1	Wheat	mitochondrion	41.89	41.97
TraesCS6D01G341400.1	Wheat	mitochondrion	41.89	41.73
Zm00001d052030_P001	Maize	plastid	41.89	41.33
HORVU6Hr1G085430.2	Barley	mitochondrion	42.08	41.21
EES07683	Sorghum	mitochondrion	41.31	40.61
Zm00001d011182_P001	Maize	endoplasmic reticulum	30.89	32.52
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	28.19	29.74
Solyc07g054100.1.1	Tomato	cytosol	18.53	29.72
Solyc11g006380.1.1	Tomato	cytosol	28.19	29.67
Solyc10g047370.1.1	Tomato	mitochondrion	22.01	28.57
Solyc01g089870.2.1	Tomato	nucleus	29.34	27.89
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	24.13	27.53
Solyc06g005140.2.1	Tomato	mitochondrion	27.22	27.12
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	25.29	27.01
Solyc07g063220.2.1	Tomato	plastid	28.57	26.67
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	24.71	25.96
Solyc01g100580.2.1	Tomato	mitochondrion	22.97	24.69
Solyc06g071900.2.1	Tomato	mitochondrion	19.88	19.25
Solyc12g020050.1.1	Tomato	plastid	19.69	16.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4AY24
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:Solyc01g081320.2	EnsemblPlants:Solyc01g081320.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002762986	:

Description

No Description!

Coordinates

chr1:-:80544073..80546273

Molecular Weight (calculated)

59229.5 Da

IEP (calculated)

9.063

GRAVY (calculated)

-0.333

Length

518 amino acids

Sequence
(BLAST)

001: MILQSSKQDI PKATRTHSPK MQFKVPVGFN LSRFHSSWTW RFVLSQSYSS NKAAPINGSY SGGGDLKKRI LKVVSSGVNP TRSVLENWVD EGRRVCLNEL
101: RVIIRQLMKR RRFGPALEML RHDYARRLEL TVKEHGRIEA ERYFESLTST ISLKAASLPL LHCYVEERST EKAEAFMLKI NKLGLALSPH PFNEMMKLYK
201: ATSQYQKVPS VILQMKQNRI TLNVLSYNLW MDACGELSGV ESAEMVYKEM LSNQNVEVGW SSLATLANIY KKAGLTDKAV LALKTAEKKI SNSNHYPYFF
301: LITQYASLKN KDGVHRVWEA SKAVNSPITC ANYMCILSSL VKLCDMREAE RIFVEWESQC RTYDIRVSNI LLGGYMRNGS VEKAESLHYH TLEKGGCPNS
401: KTWEILVEGW IRSQQMDKAT DALKSGLAAL KHYEWRPSPS IDVAISEYFE ETRQFEKAME FLTTLRHFGP ANLQVYKSLL RMQISREESP LYILEMMQND
501: GIDVDDETSA ICSDVLHC

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.