CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52991	Soybean	mitochondrion	76.87	89.11
VIT_18s0001g07000.t01	Wine grape	mitochondrion	49.22	56.37
Bra036629.1-P	Field mustard	mitochondrion	43.83	52.83
CDX99984	Canola	mitochondrion	43.83	52.72
CDY19721	Canola	mitochondrion	43.65	52.62
CDY25035	Canola	mitochondrion, plastid	43.48	51.02
Bra020588.1-P	Field mustard	mitochondrion	43.3	50.71
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	42.96	50.31
PGSC0003DMT400004477	Potato	plastid	41.91	50.1
CDY05574	Canola	mitochondrion	44.17	48.47
Solyc01g081320.2.1	Tomato	plastid	43.48	48.26
TraesCS6B01G391300.1	Wheat	mitochondrion	40.87	45.54
TraesCS6D01G341400.1	Wheat	mitochondrion	40.52	44.81
GSMUA_Achr7P12830_001	Banana	mitochondrion	42.26	44.67
Os02t0796400-00	Rice	mitochondrion	40.0	44.49
HORVU6Hr1G085430.2	Barley	mitochondrion	40.87	44.42
EES07683	Sorghum	mitochondrion	40.7	44.4
TraesCS6A01G358600.1	Wheat	mitochondrion	39.83	44.29
Zm00001d052030_P001	Maize	plastid	40.0	43.81
Zm00001d011182_P001	Maize	endoplasmic reticulum	29.39	34.35
KRH55328	Soybean	plastid	24.52	28.66
KRH10858	Soybean	mitochondrion	23.65	27.98
KRH26940	Soybean	cytosol	23.13	26.81
KRH22399	Soybean	cytosol	21.74	26.26
KRH48889	Soybean	plastid	24.52	25.82
KRH45616	Soybean	nucleus	21.91	25.71
KRH69203	Soybean	cytosol	17.22	25.45
KRG99413	Soybean	cytosol, mitochondrion	15.48	25.36
KRH66454	Soybean	plastid	24.0	24.86
KRH31780	Soybean	mitochondrion	20.52	24.79
KRH43872	Soybean	mitochondrion	16.87	24.56
KRH10583	Soybean	mitochondrion	16.7	24.06
KRH66764	Soybean	cytosol	15.83	21.93
KRH10262	Soybean	mitochondrion	17.74	20.12
KRH23068	Soybean	mitochondrion	16.7	18.93
KRH69049	Soybean	mitochondrion	19.3	18.23
KRH31614	Soybean	mitochondrion	18.96	18.17
KRG95098	Soybean	mitochondrion	17.74	16.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100813805	MapMan:35.1	EMBL:ACUP02002229	EnsemblPlantsGene:GLYMA_04G097400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KJ76	EnsemblPlants:KRH62276	ProteinID:KRH62276	ProteinID:KRH62276.1
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	InterPro:Pentatricopeptide_repeat
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296ACE1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:8815340..8818520

Molecular Weight (calculated)

65901.6 Da

IEP (calculated)

9.188

GRAVY (calculated)

-0.141

Length

575 amino acids

Sequence
(BLAST)

001: MANRFISAGI RRYAQPRLLS PLSDYQPNQL SKFCFISFVF GARTLCSSVD SRASAFHVPL ARKLKSRKQS PLPALKNWVD EGNDVSHSEL RRIARTLVKS
101: KCYHHALEVV KWIENQKNFH MIPADYAMKL ELIIENYDLM EAEEYFMNLP DSAAKKAACL TLLRGYIRVR DTNKAETFMV KLYELGLVLS PHPFNEMMKL
201: YLATCEYRKV PLVMQQMKRN KVPCNVLSYN LWMNACTEEE GYGVAAVETV FRQMQNDRNV EVGWSSLATL ANAYKKAGQS KKAILVLKDA ERKLSTCNRL
301: GYFFLITLYA SLKEKEGVLR LWEASKAVGG RISCANYICI LICLVKLGDI VQAKRIFLEW ESNCQKYDIR VSNVLLGAYA RNGSMEEAES LHLHTLQKGG
401: CPNYKTLEIL MEGYVNWQKM DEAIITMKRA LAMMKDCHWR PPHGLVLAIA EYLEKDGNLK YANKYITDLR NFGLFSLSLY KILLRMHLSA NKPPFHILKM
501: MDEDKIEMDN ETLSILKAFT GCVQAEVFGG EAVTWNSVSF LGFFKENFNS YISMYVFRLK QVELKSTGAE RFCGI

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.