Factsheet for Os02t0796400-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07683	Sorghum	mitochondrion	76.21	74.76
TraesCS6B01G391300.1	Wheat	mitochondrion	74.47	74.61
TraesCS6D01G341400.1	Wheat	mitochondrion	74.85	74.42
TraesCS6A01G358600.1	Wheat	mitochondrion	74.27	74.27
HORVU6Hr1G085430.2	Barley	mitochondrion	74.66	72.97
Zm00001d052030_P001	Maize	plastid	74.08	72.95
Zm00001d011182_P001	Maize	endoplasmic reticulum	51.45	54.06
GSMUA_Achr7P12830_001	Banana	mitochondrion	53.77	51.1
VIT_18s0001g07000.t01	Wine grape	mitochondrion	47.39	48.8
KRH52991	Soybean	mitochondrion	44.68	46.57
Bra036629.1-P	Field mustard	mitochondrion	41.39	44.86
CDY19721	Canola	mitochondrion	41.2	44.65
PGSC0003DMT400004477	Potato	plastid	41.39	44.49
CDX99984	Canola	mitochondrion	41.01	44.35
CDY25035	Canola	mitochondrion, plastid	41.39	43.67
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	41.39	43.58
Solyc01g081320.2.1	Tomato	plastid	42.94	42.86
Bra020588.1-P	Field mustard	mitochondrion	40.62	42.77
CDY05574	Canola	mitochondrion	41.01	40.46
KRH62276	Soybean	mitochondrion	44.49	40.0
Os12t0527900-01	Rice	mitochondrion	30.17	30.35
Os10t0501300-01	Rice	mitochondrion	27.66	27.88
Os07t0598500-01	Rice	mitochondrion	26.89	27.47
Os04t0544400-00	Rice	plastid	27.08	27.4
Os01t0301000-01	Rice	mitochondrion	26.31	26.05
Os04t0450200-01	Rice	cytosol	14.7	26.03
Os04t0320200-01	Rice	mitochondrion	25.92	25.57
Os01t0301700-01	Rice	mitochondrion	23.98	24.6
Os10t0501000-01	Rice	cytosol	21.28	24.39
Os01t0301500-01	Rice	cytosol, mitochondrion	21.08	22.52
Os10t0501200-00	Rice	mitochondrion	26.31	21.73
Os01t0280400-00	Rice	mitochondrion	21.66	18.33
Os12t0170100-01	Rice	mitochondrion	21.28	18.0
Os07t0222700-01	Rice	mitochondrion	2.32	6.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4331007	ProteinID:BAD19082.1	ProteinID:BAD19283.1	ProteinID:BAF10302.1
ProteinID:BAS81366.1	ProteinID:EAZ24939.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os02g0796400
EnsemblPlants:Os02t0796400-00	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
InterPro:Pentatricopeptide_repeat	UniProt:Q6K8X7	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000037574F	RefSeq:XP_015625498.1
RefSeq:XP_015625499.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os02t0796400-00)

Coordinates

chr2:-:33857413..33859405

Molecular Weight (calculated)

58333.7 Da

IEP (calculated)

9.310

GRAVY (calculated)

-0.234

Length

517 amino acids

Sequence
(BLAST)

001: MAAVVRRSRL LALLVGASRP NPRPFCCSSS SSSAPPATAR EDGDGGDLLS RCLLRIPRKS GRAAAAAAVE RWARERGRVS PPELRRDVVR LRRARRYEQA
101: LEILSWMDSH NDFRLSPSDH MVRLDLIAKV HGTSQAEEYY RKLSTAASKK AASFPLLHCY VTERNVQKAE TFMAELQRYG LPVDPHSFNE IMKLYVATCQ
201: YEKVLSVIYL MKRNNIPRNV LSYNIWMNAC AEVSGLASVQ SAFKEMLNDD MVEVGWSTYC TLANIFKKYG QSSKALACLR TAETKLSSTG RLGYSFIMTC
301: YAALNDRDGV IRLWEASKIV PGRIPAANYM SAMVCLIKVG DIGRAEWTFG SWEAESKKHD VRVSNVLLGA YVRNGWIEKA ERLHLHMLEK GAHPNYKTWE
401: ILMEGFVQSK QMDKAVNAMK KGLSLLKTCH WRPPLELLEA IAKYFEEQGS VEDADRFIKV LQKFNLTSLP LYKSLLGAYI NADIVPQNIP QMIAGDQIDM
501: DEEMDQLIIR ASKIDIT

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.