Factsheet for GSMUA_Achr7P12830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g07000.t01	Wine grape	mitochondrion	52.39	56.77
Os02t0796400-00	Rice	mitochondrion	51.1	53.77
TraesCS6B01G391300.1	Wheat	mitochondrion	50.37	53.1
TraesCS6A01G358600.1	Wheat	mitochondrion	49.82	52.42
TraesCS6D01G341400.1	Wheat	mitochondrion	49.82	52.12
EES07683	Sorghum	mitochondrion	50.18	51.8
HORVU6Hr1G085430.2	Barley	mitochondrion	50.18	51.61
Zm00001d052030_P001	Maize	plastid	48.9	50.67
KRH52991	Soybean	mitochondrion	44.12	48.39
CDX99984	Canola	mitochondrion	41.91	47.7
Bra036629.1-P	Field mustard	mitochondrion	41.73	47.59
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	42.83	47.45
CDY19721	Canola	mitochondrion	41.54	47.38
CDY25035	Canola	mitochondrion, plastid	42.1	46.73
PGSC0003DMT400004477	Potato	plastid	40.99	46.36
Bra020588.1-P	Field mustard	mitochondrion	40.99	45.42
Solyc01g081320.2.1	Tomato	plastid	43.01	45.17
CDY05574	Canola	mitochondrion	41.18	42.75
KRH62276	Soybean	mitochondrion	44.67	42.26
Zm00001d011182_P001	Maize	endoplasmic reticulum	37.5	41.46
GSMUA_Achr1P17120_001	Banana	mitochondrion	29.78	31.15
GSMUA_AchrUn_...	Banana	cytosol	20.77	30.29
GSMUA_Achr1P02980_001	Banana	mitochondrion	29.04	29.81
GSMUA_Achr10P...	Banana	cytosol	24.08	29.71
GSMUA_Achr11P...	Banana	mitochondrion	26.1	27.36
GSMUA_Achr1P16170_001	Banana	cytosol	24.45	27.31
GSMUA_Achr5P20750_001	Banana	mitochondrion	27.21	27.11
GSMUA_Achr5P27560_001	Banana	cytosol	19.3	20.47
GSMUA_Achr9P23230_001	Banana	mitochondrion	17.83	18.58
GSMUA_Achr8P21680_001	Banana	mitochondrion	20.22	17.8
GSMUA_Achr11P...	Banana	mitochondrion	20.22	17.52

Protein Annotations

EnsemblPlants:GSMUA_Achr7P12830_001	EnsemblPlants:GSMUA_Achr7T12830_001	EnsemblPlantsGene:GSMUA_Achr7G12830_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	UniParc:UPI000294D9B7
UniProt:M0TH20	MapMan:35.1	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:GMGC_GENE;Acc:GSMUA_Achr7G12830_001]

Coordinates

chr7:+:10323053..10326825

Molecular Weight (calculated)

61861.2 Da

IEP (calculated)

9.102

GRAVY (calculated)

-0.172

Length

544 amino acids

Sequence
(BLAST)

001: MATASLFAAL LRRCCSRNPS APSLRTSPFA LLESSRPFSS GPPTSEVLAV EEGTAASEDN LRSRIFRLRL PKRSATDALD RWAGEGRTVT ASELRQITKD
101: LMRSQRYKHA LEIITWMDSN GPFQLSSSDH ARRLDLIIKV HTIAEAVTYF KKLTTSASKK AAAFPLLHYY VKARDLQKAE SLMSMLQNCG LAVDAHPFNE
201: MMKLYMATDK FESVTHVIQY MLRSKISLNV LSYTLWMNAC GKLSGIASAE MVLMKMINDK NVEVGWSTYS TLANIYTNSG YIDKAYDALR VAEEKLSVTK
301: RLAYYFIMTN YSALSDRDGV LRLWESSKKV PGRITCANYM CVILCLVKVG DIREAERIFR TWESECRNYD VRVSNVLLGA YMRNGWMHKA ESLHLHTLEK
401: GARPNYKTWE ILMEGWVNNR QMDRAVEAMK KGFSMLKDCQ WRPPAAILMS IAEYFEEHGS VDEAKTFVKV LQGLGLMDLP LYKLFLRTHI KARRVVPNIL
501: RMMGHGQIDL DEETLSLIQR MSNVSSTVDD DFLCDMNILT FMGC

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.