Factsheet for TraesCS6D01G341400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G358600.1	Wheat	mitochondrion	96.35	96.91
TraesCS6B01G391300.1	Wheat	mitochondrion	94.23	94.96
HORVU6Hr1G085430.2	Barley	mitochondrion	94.81	93.19
Os02t0796400-00	Rice	mitochondrion	74.42	74.85
EES07683	Sorghum	mitochondrion	73.85	72.87
Zm00001d052030_P001	Maize	plastid	71.54	70.86
Zm00001d011182_P001	Maize	endoplasmic reticulum	50.77	53.66
GSMUA_Achr7P12830_001	Banana	mitochondrion	52.12	49.82
VIT_18s0001g07000.t01	Wine grape	mitochondrion	47.31	49.0
KRH52991	Soybean	mitochondrion	44.42	46.57
CDY19721	Canola	mitochondrion	41.54	45.28
Bra036629.1-P	Field mustard	mitochondrion	41.35	45.07
CDX99984	Canola	mitochondrion	41.35	44.98
CDY25035	Canola	mitochondrion, plastid	42.31	44.9
Bra020588.1-P	Field mustard	mitochondrion	42.12	44.6
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	41.73	44.2
PGSC0003DMT400004477	Potato	plastid	40.19	43.45
CDY05574	Canola	mitochondrion	42.69	42.37
Solyc01g081320.2.1	Tomato	plastid	41.73	41.89
KRH62276	Soybean	mitochondrion	44.81	40.52
TraesCS5D01G112000.1	Wheat	mitochondrion	31.15	31.76
TraesCS1D01G166700.1	Wheat	mitochondrion	27.31	28.69
TraesCS2D01G389900.1	Wheat	plastid	26.35	26.81
TraesCS1D01G166800.1	Wheat	mitochondrion	25.58	26.03
TraesCS2D01G315700.1	Wheat	mitochondrion	21.54	25.4
TraesCS6D01G079300.1	Wheat	mitochondrion	24.04	24.56
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.19	24.39
TraesCS6D01G079100.1	Wheat	mitochondrion	21.73	23.59
TraesCS2D01G553300.1	Wheat	mitochondrion	25.38	23.57
TraesCS6D01G079200.1	Wheat	plastid	24.23	23.29
TraesCS2D01G553100.1	Wheat	mitochondrion	22.88	21.83
TraesCS7D01G293300.1	Wheat	mitochondrion	21.35	21.64
TraesCS6D01G079400.1	Wheat	plastid	18.46	21.29
TraesCS3D01G195000.1	Wheat	mitochondrion	23.08	19.58

Protein Annotations

EnsemblPlants:TraesCS6D01G341400.1	EnsemblPlantsGene:TraesCS6D01G341400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:440381314..440383364

Molecular Weight (calculated)

58627.9 Da

IEP (calculated)

9.251

GRAVY (calculated)

-0.224

Length

520 amino acids

Sequence
(BLAST)

001: MAMAAAVARR SRRLLRLLSS RPNPKPASLS SCSSPSPSFD TPATAGEREG DPLSWRLLRL RSPGAAAAAI DGWAQERGRV SRPDLQRAVS QLRRARRYGH
101: ALEILSWMES RKELKLLPLD HAARLDLIAK VHGTSQAEEY YNKLNSASRE AASFPLLHCY VADRNVQKAE SFMASLQSIG LPVDPHSFNE MMKLYVATCE
201: YEKVFSVIDL MKRNNIPRNA LSYNLWMNAC SVSDVSSVQS VFKEMVNDVT IEVGWSTYCT LANIFKKHEL NSKALACLRT AETKLSTTQR LGYSFVMTCY
301: AALGDSDGVM RLWEASKCVP GRIPAANYMT AILCLIKVGD FDRAEWIFGS WEAECRKHDV RVSNVLLGAY VRNGWIEKAE KLHLHMLEKG ARPNYKTWEI
401: LMEGFVQSRQ MDKAVNAMKK ALSLMKSCHW RPPLKLVEAI AAFFEEQGNT DDASRYIKLL QKFNLTSLPL YKSVLRAYIK ADTVVPTNIS EMIARDDIVM
501: DEEMDHLIIR ASKIDIRGDV

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.