Factsheet for TraesCS1D01G166700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G188200.1	Wheat	mitochondrion	94.34	94.92
TraesCS1A01G168700.1	Wheat	mitochondrion	95.56	80.99
Os10t0501300-01	Rice	mitochondrion	61.41	59.26
OQU91552	Sorghum	mitochondrion	57.37	55.69
Os10t0501000-01	Rice	cytosol	50.71	55.65
Zm00001d032543_P001	Maize	mitochondrion	56.57	54.16
Os10t0501200-00	Rice	mitochondrion	61.21	48.4
GSMUA_Achr5P20750_001	Banana	mitochondrion	41.21	37.36
PGSC0003DMT400058755	Potato	cytosol	27.47	34.43
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	32.93	32.53
PGSC0003DMT400047256	Potato	extracellular	21.01	32.2
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	29.49	32.16
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	30.91	32.01
Solyc07g054100.1.1	Tomato	cytosol	20.81	31.89
AT2G20710.1	Thale cress	mitochondrion	31.52	31.84
Bra036673.1-P	Field mustard	mitochondrion	30.71	31.8
CDY39781	Canola	mitochondrion	30.71	31.8
CDY03299	Canola	mitochondrion	30.3	31.71
CDY35213	Canola	cytosol	2.42	29.27
TraesCS5D01G112000.1	Wheat	mitochondrion	29.9	29.02
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	28.89	29.01
KRH22399	Soybean	cytosol	27.68	28.78
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	28.89	28.71
KRH26940	Soybean	cytosol	28.69	28.63
TraesCS6D01G341400.1	Wheat	mitochondrion	28.69	27.31
TraesCS2D01G553300.1	Wheat	mitochondrion	30.71	27.14
CDY35212	Canola	mitochondrion	15.35	27.05
CDY65573	Canola	mitochondrion	20.2	27.03
TraesCS1D01G166800.1	Wheat	mitochondrion	27.88	27.01
TraesCS6D01G079100.1	Wheat	mitochondrion	25.86	26.72
Bra011054.1-P	Field mustard	mitochondrion	18.38	26.69
TraesCS2D01G389900.1	Wheat	plastid	27.27	26.42
TraesCS6D01G079300.1	Wheat	mitochondrion	26.67	25.93
AT1G28020.1	Thale cress	cytosol, plastid	24.85	24.9
TraesCS6D01G079200.1	Wheat	plastid	27.07	24.77
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.87	24.77
TraesCS2D01G553100.1	Wheat	mitochondrion	27.07	24.59
CDY00734	Canola	mitochondrion	8.69	24.29
AT1G43010.1	Thale cress	mitochondrion	12.53	24.12
CDY27645	Canola	mitochondrion	12.12	23.17
CDY05786	Canola	plastid	22.63	23.09
Bra036496.1-P	Field mustard	plastid	22.42	22.89
CDY31943	Canola	plastid	22.22	22.68
CDY71968	Canola	plastid	12.93	21.92
AT3G11380.1	Thale cress	mitochondrion	23.84	21.81
TraesCS2D01G315700.1	Wheat	mitochondrion	18.79	21.09
TraesCS6D01G079400.1	Wheat	plastid	19.19	21.06
TraesCS7D01G293300.1	Wheat	mitochondrion	21.62	20.86
CDY48421	Canola	mitochondrion	16.36	19.61
Bra032862.1-P	Field mustard	mitochondrion	14.95	19.53
AT3G11350.1	Thale cress	mitochondrion	13.74	18.94
CDY27647	Canola	mitochondrion	15.56	18.92
TraesCS3D01G195000.1	Wheat	mitochondrion	23.23	18.76
Bra032863.1-P	Field mustard	mitochondrion	15.15	18.75
AT2G20720.1	Thale cress	cytosol	11.11	18.39
AT1G28000.1	Thale cress	mitochondrion	13.94	17.78
CDY53325	Canola	mitochondrion	23.43	16.62
Bra032865.1-P	Field mustard	cytosol	18.99	16.38
Bra001400.1-P	Field mustard	mitochondrion, plastid	23.64	15.62
CDY53324	Canola	mitochondrion, plastid	22.83	15.46
CDX73880	Canola	mitochondrion	14.14	13.97
CDY66759	Canola	cytosol	19.8	13.12
Bra032866.1-P	Field mustard	mitochondrion	16.16	12.54

Protein Annotations

EnsemblPlants:TraesCS1D01G166700.1	EnsemblPlantsGene:TraesCS1D01G166700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF625
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:238059326..238060889

Molecular Weight (calculated)

56102.0 Da

IEP (calculated)

7.567

GRAVY (calculated)

-0.237

Length

495 amino acids

Sequence
(BLAST)

001: MHHLLPPRGC LLRCLSTAAE TAAASPHPPR RPLADSLYRR VTAVWNPRLP LTPVLEQWAV TEGRAVEKNN LMCIVKKPVR IRRLSHALEL SMWMTDRRYM
101: YLSPGDVAYR LELISKVQGP ESAVNYWKGL SIQVKNSHCY GSLLKCYAEA KSVDEAEKLF AEMQDLGMMR SYPYNVMMKL YWETGQVERV HAMYRTMEES
201: GIKPDVFSIN ILLTVLAAAG NFDGIEEIIK KVDPKIVNWH SHAIVARAFM EAGQQGKALR AIQESEKQIG RKDERVAYGF LLSMFADLGM SSEADRVWNV
301: YKSKVPACNS MYMCRITALL KMNDIDGAEK AFGEWESRYV HHDIHLTNLL LNAYCAKGLM EKAEALLDEA IAKGRTPHRS TWYSLASGFF QDGQVSKAVD
401: MTRKALACAS SRWEPDLTNV LMSLEHFMEQ KNVEAAEEMA SLLRNLVPLT RDVYHILLQT YVHAGQPVSD LLDRMKKDGF EADEETDKII AGICQ

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.