CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032543_P001	Maize	mitochondrion	87.06	85.88
TraesCS1B01G188200.1	Wheat	mitochondrion	55.49	57.52
TraesCS1D01G166700.1	Wheat	mitochondrion	55.69	57.37
Os10t0501300-01	Rice	mitochondrion	56.67	56.34
Os10t0501000-01	Rice	cytosol	48.82	55.21
TraesCS1A01G168700.1	Wheat	mitochondrion	56.08	48.97
Os10t0501200-00	Rice	mitochondrion	57.25	46.65
GSMUA_Achr5P20750_001	Banana	mitochondrion	41.96	39.19
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	31.37	35.24
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	32.55	34.73
PGSC0003DMT400058755	Potato	cytosol	26.27	33.92
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	33.14	33.73
AT2G20710.1	Thale cress	mitochondrion	31.18	32.45
Bra036673.1-P	Field mustard	mitochondrion	30.0	32.01
CDY39781	Canola	mitochondrion	30.0	32.01
CDY03299	Canola	mitochondrion	29.61	31.92
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	29.61	30.63
Solyc07g054100.1.1	Tomato	cytosol	19.22	30.34
PGSC0003DMT400047256	Potato	extracellular	19.22	30.34
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	29.22	29.92
KRH26940	Soybean	cytosol	28.82	29.64
KRH22399	Soybean	cytosol	26.27	28.15
CDY65573	Canola	mitochondrion	20.39	28.11
EER90330	Sorghum	mitochondrion	27.65	28.09
EER91421	Sorghum	mitochondrion	27.25	28.02
Bra011054.1-P	Field mustard	mitochondrion	18.43	27.57
EES02848	Sorghum	mitochondrion	28.63	27.55
CDY35212	Canola	mitochondrion	15.1	27.4
EES12592	Sorghum	plastid	27.25	26.99
EER90329	Sorghum	mitochondrion	26.27	26.64
CDY00734	Canola	mitochondrion	9.02	25.99
AT1G28020.1	Thale cress	cytosol, plastid	24.9	25.71
OQU79216	Sorghum	cytosol	27.65	25.68
CDY27645	Canola	mitochondrion	12.94	25.48
EER87766	Sorghum	cytosol	26.67	25.37
CDY35213	Canola	cytosol	1.96	24.39
CDY71968	Canola	plastid	13.92	24.32
EES07683	Sorghum	mitochondrion	24.71	23.91
AT1G43010.1	Thale cress	mitochondrion	11.76	23.35
AT3G11380.1	Thale cress	mitochondrion	24.71	23.29
EES10908	Sorghum	mitochondrion	18.82	23.13
CDY05786	Canola	plastid	21.37	22.47
Bra036496.1-P	Field mustard	plastid	21.18	22.27
CDY31943	Canola	plastid	20.98	22.06
AT1G28000.1	Thale cress	mitochondrion	15.49	20.36
Bra032862.1-P	Field mustard	mitochondrion	15.1	20.32
AT2G20720.1	Thale cress	cytosol	11.76	20.07
CDY48421	Canola	mitochondrion	16.08	19.85
Bra032863.1-P	Field mustard	mitochondrion	15.1	19.25
OQU86720	Sorghum	mitochondrion	23.14	19.25
AT3G11350.1	Thale cress	mitochondrion	13.53	19.22
CDY27647	Canola	mitochondrion	15.29	19.16
Bra032865.1-P	Field mustard	cytosol	20.98	18.64
Bra001400.1-P	Field mustard	mitochondrion, plastid	25.88	17.62
CDY53325	Canola	mitochondrion	23.92	17.48
CDY53324	Canola	mitochondrion, plastid	24.51	17.1
OQU79953	Sorghum	cytosol	20.78	16.96
OQU88705	Sorghum	plastid	20.98	16.8
CDX73880	Canola	mitochondrion	14.71	14.97
CDY66759	Canola	cytosol	21.37	14.59
Bra032866.1-P	Field mustard	mitochondrion	17.25	13.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8065206	UniProt:C5WWG0	ProteinID:EER93986.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	ProteinID:KXG38230.1	EnsemblPlants:OQU91552	ProteinID:OQU91552	ProteinID:OQU91552.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF625	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3001G203500	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8284E	RefSeq:XP_002466988.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:18533454..18536259

Molecular Weight (calculated)

57677.5 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.272

Length

510 amino acids

Sequence
(BLAST)

001: MYRLLLRRFS TAAEGAAAAS PSPSPSPSPS TSMSPTLRQP LPDNLYRRIM NVGRPSIPLS PVLKQWDQEG HTVKKFVIQA IVKKLVGLRR FAHALELSFW
101: MTDRRHLHLT AGDVAYRLDL ISKVHGLEKA VEYFGMVPKR LRMPQCYGSL LKCYVEAKAV DKAEEHFAKM QEMGMKSSYT YTSMMKLYLE TGQLERVHAM
201: FQDMEEKGVK PDTFSVESML AAYIAAEDVE GVGKVLDKAN PHEKLVKWHG QALAASLFMK SGMQVRAVMA LLEAERRISP KSSRIAYAFL LKTYTDLGMY
301: PEVGRIWSVY KSKVPPSNTM YLSRISALLK MNDIDGAEAT LKEWETVSLR YHDFRLINLM VDAYCREGLV EKAVALVDDA IKKGRTPYAN TWYKLAGGFF
401: KTGEVSKAVD MTRKALESAT PPWKPDLTNV LMSLEHFMNQ KDVEAAEEIA SMLQKLGPLT KEVYHCLLKT YVRAGKPVSD LLERMKKDGL EADEETERMR
501: VDLHPLSITK

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.