CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023915_P001	Maize	mitochondrion	82.88	90.82
Os12t0527900-01	Rice	mitochondrion	77.41	82.68
TraesCS5B01G104900.1	Wheat	mitochondrion	76.5	82.35
TraesCS5D01G112000.1	Wheat	mitochondrion	76.32	82.16
TraesCS5A01G099700.1	Wheat	mitochondrion	76.32	82.16
HORVU5Hr1G027150.1	Barley	mitochondrion	76.68	81.91
GSMUA_Achr1P17120_001	Banana	mitochondrion	55.37	58.46
VIT_16s0039g02800.t01	Wine grape	cytosol	45.54	50.2
CDX91277	Canola	mitochondrion	44.99	47.59
Bra018528.1-P	Field mustard	mitochondrion	44.44	47.47
CDX97288	Canola	mitochondrion	44.26	47.28
PGSC0003DMT400077284	Potato	mitochondrion	44.63	46.76
Solyc06g005140.2.1	Tomato	mitochondrion	44.26	46.73
PGSC0003DMT400092266	Potato	mitochondrion	15.48	45.95
AT4G02820.1	Thale cress	mitochondrion	44.26	45.68
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	43.53	45.61
PGSC0003DMT400031020	Potato	cytosol	9.11	42.02
PGSC0003DMT400031016	Potato	cytosol	21.86	39.47
EES12592	Sorghum	plastid	26.96	28.74
OQU91552	Sorghum	mitochondrion	25.68	27.65
EES07683	Sorghum	mitochondrion	26.23	27.32
EES02848	Sorghum	mitochondrion	26.05	26.98
EES10908	Sorghum	mitochondrion	20.04	26.51
EER91421	Sorghum	mitochondrion	23.86	26.41
EER90330	Sorghum	mitochondrion	24.04	26.29
EER90329	Sorghum	mitochondrion	23.86	26.04
EER87766	Sorghum	cytosol	25.32	25.93
OQU86720	Sorghum	mitochondrion	21.31	19.09
CDY36566	Canola	mitochondrion	19.49	17.8
OQU88705	Sorghum	plastid	20.4	17.58
OQU79953	Sorghum	cytosol	18.58	16.32
CDY36565	Canola	cytosol	0.91	1.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8067218	UniProt:A0A1Z5R779	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:OQU79216	ProteinID:OQU79216	ProteinID:OQU79216.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3008G113200
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B42547E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:52074821..52077543

Molecular Weight (calculated)

62227.0 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.387

Length

549 amino acids

Sequence
(BLAST)

001: MRAGGDEEEH GDEDSRRVSH QRGGFADRSL HEPARRSWAA GLRTNDQAML AATGGRLFSA ASARGGHAGG GVSAGSGDTL GKRLLKLIYP KRSAVVVLRR
101: WAEEGRTVEK YQLNRVVREL RKYGRFKHAL EICEWMRTRP EMRLLPGDHA VHLDLVAKVR GLASAVKFFE DMPERAKAPS TCNALLHAYV QHGAREKAEA
201: MMAEMARAGY LTCALPFNHM MSLYMASGEL ERVPEMIKEL RRYTVPDLVT YNMWLTYCSK KKSVKSAEKV FALMKDDRVV PDWMTFSLLG SIYINAGLHV
301: EGRNALVEME KMASRKERAA YSSLLTLYAS LSDRGNLDRV WNKMRETFRK FSDTEYKCML TSLTRFNDIA AAEGLYREWE SASGTRDSRI PNTILSYYIK
401: NGMIEKAESF LGQIVEKGVK PSYSTWELFI WGYLGDNKTD KVLECLKKAL SSLEKWEPNH ELATAIFSQV EKTGDIEAAE KLLVVFRDAG YVTTEMYNSV
501: LRTYAEAKLM PLIVDERMEQ DKVAMDVETR RLLRLTSKYP IGEVSTLMS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.