CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018528.1-P	Field mustard	mitochondrion	99.61	99.61
CDX91277	Canola	mitochondrion	95.33	94.41
AT4G02820.1	Thale cress	mitochondrion	83.66	80.83
VIT_16s0039g02800.t01	Wine grape	cytosol	60.7	62.65
PGSC0003DMT400031020	Potato	cytosol	14.01	60.5
Solyc06g005140.2.1	Tomato	mitochondrion	57.2	56.54
PGSC0003DMT400077284	Potato	mitochondrion	57.2	56.11
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	55.45	54.39
GSMUA_Achr1P17120_001	Banana	mitochondrion	54.28	53.65
PGSC0003DMT400092266	Potato	mitochondrion	18.29	50.81
Os12t0527900-01	Rice	mitochondrion	48.83	48.83
TraesCS5D01G112000.1	Wheat	mitochondrion	46.89	47.25
TraesCS5A01G099700.1	Wheat	mitochondrion	46.89	47.25
Zm00001d023915_P001	Maize	mitochondrion	45.91	47.11
TraesCS5B01G104900.1	Wheat	mitochondrion	46.69	47.06
HORVU5Hr1G027150.1	Barley	mitochondrion	46.89	46.89
PGSC0003DMT400031016	Potato	cytosol	27.63	46.71
OQU79216	Sorghum	cytosol	47.28	44.26
CDY44801	Canola	mitochondrion	24.71	31.44
CDY03299	Canola	mitochondrion	28.4	30.87
CDY39781	Canola	mitochondrion	28.6	30.75
CDY19721	Canola	mitochondrion	27.43	29.56
CDY24553	Canola	mitochondrion	16.54	29.51
CDX96239	Canola	mitochondrion	28.02	29.33
CDX99984	Canola	mitochondrion	27.24	29.29
CDY35213	Canola	cytosol	2.33	29.27
CDY46999	Canola	mitochondrion	27.82	29.12
CDY25035	Canola	mitochondrion, plastid	27.63	28.98
CDY34141	Canola	mitochondrion	27.63	28.86
CDY35212	Canola	mitochondrion	15.56	28.47
CDY15126	Canola	cytosol, mitochondrion, plastid	27.82	27.93
CDY65573	Canola	mitochondrion	20.04	27.84
CDY05574	Canola	mitochondrion	28.21	27.67
CDX98698	Canola	mitochondrion	26.26	27.66
CDX90079	Canola	mitochondrion	27.43	27.54
CDY50357	Canola	mitochondrion	10.7	27.5
CDY15237	Canola	mitochondrion	27.43	27.49
CDY50358	Canola	cytosol	12.45	27.23
CDX91822	Canola	mitochondrion	26.46	27.2
CDY27645	Canola	mitochondrion	13.62	27.03
CDX89976	Canola	mitochondrion	26.85	26.8
CDY00734	Canola	mitochondrion	9.14	26.55
CDX90962	Canola	mitochondrion	25.68	26.35
CDY71968	Canola	plastid	14.2	25.0
CDY24554	Canola	cytosol	7.2	24.18
CDY31943	Canola	plastid	20.23	21.44
CDY05786	Canola	plastid	20.04	21.24
CDY27647	Canola	mitochondrion	16.34	20.64
CDY48421	Canola	mitochondrion	16.34	20.34
CDY57695	Canola	mitochondrion	23.74	20.23
CDY09903	Canola	mitochondrion	20.82	20.19
CDY39654	Canola	mitochondrion	23.54	20.13
CDY36566	Canola	mitochondrion	23.35	19.97
CDY06272	Canola	mitochondrion	20.43	19.81
CDX94049	Canola	cytosol	25.49	18.66
CDX97686	Canola	plastid	21.6	17.9
CDY30088	Canola	plastid	21.01	17.5
CDY53325	Canola	mitochondrion	23.35	17.19
CDY53324	Canola	mitochondrion, plastid	23.54	16.55
CDX73880	Canola	mitochondrion	15.37	15.77
CDY66759	Canola	cytosol	19.46	13.39
CDX79395	Canola	cytosol	23.74	11.9
CDY36565	Canola	cytosol	1.17	1.79

Protein Annotations

EnsemblPlants:CDX97288	EnsemblPlantsGene:GSBRNA2T00104331001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF935	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX97288	ProteinID:CDX97288.1
SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EEDED5	MapMan:35.1	:

Description

BnaA02g20790D

Coordinates

chrLK031898:+:577469..579533

Molecular Weight (calculated)

58672.2 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.351

Length

514 amino acids

Sequence
(BLAST)

001: MNLSIFLRRT RATVASLCRV FSAATAETTE SGALVGGGRD TLGGRLLRLT YTKRSAVVSI RKWKEEGHTV GKYELNRIVR ELRKIKRYKH ALEICEWMVV
101: QEDIKLQPGD YALHLDLISK IRGLNSAEKF FQDMPDQMRD HAACTSLLHT YVKNKLSDKA EALFERMAEC GFLKSSCLPY NHMLSMYISN GQFEKVPEII
201: KELKSKTSPD IVTYNLWMTA FASRNDVEAA EKVYLKVKKE ANLSPDWVTY SVLTNLYAKT GNLDKAKLAL KEMEKLVSKR HRVAYASLIS LHGNLGDKDG
301: VDSTWKMIKS SFNKMNDAEY LSMISSLLKL GDFEQAKGLY DEWESVSGTR DARIPNLILA EYMNRAEETH LGDKFYERMV EKGINPSYST FEILTWGYLK
401: RKDMDKVLDC FGKAIDAVKK WTVNVRLLKA VCKELEEQGH VKGAEKLMTI LQKVGHVNTQ LYNSLLRTYA KAGEMALIVE ERMAKDNVEM DEETKELIRL
501: TSLMRVTEFS TTIS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.