CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038762.1-P	Field mustard	mitochondrion	97.13	97.13
AT4G21705.1	Thale cress	mitochondrion	84.22	83.54
CDX94049	Canola	cytosol	94.88	65.95
KRH10858	Soybean	mitochondrion	56.76	57.0
VIT_10s0597g00040.t01	Wine grape	extracellular	58.61	56.52
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	49.59	49.29
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	48.98	48.68
GSMUA_Achr1P02980_001	Banana	mitochondrion	49.39	45.47
Os07t0598500-01	Rice	mitochondrion	44.88	43.28
TraesCS1B01G188100.1	Wheat	mitochondrion	44.88	42.86
EER91421	Sorghum	mitochondrion	43.44	42.74
TraesCS1D01G166800.1	Wheat	mitochondrion	44.47	42.47
TraesCS1A01G168800.1	Wheat	mitochondrion	44.47	42.47
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	45.08	42.39
Zm00001d013923_P001	Maize	mitochondrion	41.6	40.6
EER90330	Sorghum	mitochondrion	41.39	40.24
EER90329	Sorghum	mitochondrion	40.78	39.56
CDY35213	Canola	cytosol	2.87	34.15
CDY50357	Canola	mitochondrion	13.32	32.5
CDY24553	Canola	mitochondrion	18.65	31.6
CDX96239	Canola	mitochondrion	30.12	29.94
CDY46999	Canola	mitochondrion	29.92	29.74
CDY03299	Canola	mitochondrion	28.28	29.18
CDY34141	Canola	mitochondrion	29.3	29.07
CDY39781	Canola	mitochondrion	28.28	28.87
CDX91822	Canola	mitochondrion	28.89	28.2
CDY50358	Canola	cytosol	13.52	28.09
CDY25035	Canola	mitochondrion, plastid	28.07	27.96
CDY15237	Canola	mitochondrion	29.3	27.88
CDX89976	Canola	mitochondrion	29.3	27.77
CDX90962	Canola	mitochondrion	28.48	27.74
CDY19721	Canola	mitochondrion	26.64	27.25
CDX99984	Canola	mitochondrion	26.64	27.2
CDY65573	Canola	mitochondrion	20.29	26.76
CDY71968	Canola	plastid	15.98	26.71
CDY00734	Canola	mitochondrion	9.63	26.55
CDX90079	Canola	mitochondrion	27.66	26.37
CDX97288	Canola	mitochondrion	27.66	26.26
CDY44801	Canola	mitochondrion	21.72	26.24
CDY15126	Canola	cytosol, mitochondrion, plastid	27.25	25.98
CDX91277	Canola	mitochondrion	27.46	25.82
CDY05574	Canola	mitochondrion	27.25	25.38
CDY27645	Canola	mitochondrion	13.11	24.71
CDY35212	Canola	mitochondrion	13.93	24.2
CDY24554	Canola	cytosol	6.97	22.22
CDY05786	Canola	plastid	20.7	20.82
CDY31943	Canola	plastid	20.7	20.82
CDY27647	Canola	mitochondrion	16.8	20.15
CDY57695	Canola	mitochondrion	24.18	19.57
CDY48421	Canola	mitochondrion	16.39	19.37
CDY36566	Canola	mitochondrion	23.57	19.13
CDY39654	Canola	mitochondrion	23.16	18.8
CDY09903	Canola	mitochondrion	19.88	18.3
CDY53325	Canola	mitochondrion	26.02	18.19
CDY06272	Canola	mitochondrion	19.67	18.11
CDY53324	Canola	mitochondrion, plastid	26.43	17.65
CDX73880	Canola	mitochondrion	17.83	17.37
CDX97686	Canola	plastid	21.72	17.1
CDY30088	Canola	plastid	21.31	16.86
CDY66759	Canola	cytosol	23.77	15.53
CDX79395	Canola	cytosol	23.98	11.41
CDY36565	Canola	cytosol	1.02	1.49

Protein Annotations

EnsemblPlants:CDX98698	EnsemblPlantsGene:GSBRNA2T00106763001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1638
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX98698	ProteinID:CDX98698.1	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI0004EECA9E	MapMan:35.1	:	:	:

Description

BnaA03g44830D

Coordinates

chrLK031906:-:741287..743591

Molecular Weight (calculated)

55758.8 Da

IEP (calculated)

7.363

GRAVY (calculated)

-0.439

Length

488 amino acids

Sequence
(BLAST)

001: MNILRRIPAN LFTTRYYYTN RVKKTTLYSK ISPLGNPKSS VYPELQNWVH SGNKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCI FSPTEHAVHL
101: DLIGRVHGFV SAEAYFETLK EHHKNDKTHG ALLNCYVRQQ DVEKSLLHFE KMKELGYASS SLTYNNIMCL YTNIGQHEKV PRVLDEMKEE NVAPDNYSYR
201: LCINAFGVMN DLERIGEILR DMETVDWNTY AVAAKFYIDG GDRGKAVELL RMSEDRLESK DGEGYNHLIT LYSKLGDKGE VLRLWELEKD ACKRRINQDY
301: LTVLQSLVKI DALKEAEEVV KEWESSSGNC YDFRVPSVVI RGYVGRGMEE KAEAMLEDLG RRGKATTPDS WGLVAAAYVE KGVLDNAYKC LKTALDVEVG
401: KRKWRPGVKV VTSVLSWLGN EGSLKEVESF VASLRNCMGV NREMYHALVK ADVREGGSNV DTLLQRMKED KIETDEETMA ILSTRSHC

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.