CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91421	Sorghum	mitochondrion	81.67	82.66
EER90329	Sorghum	mitochondrion	81.87	81.71
Os07t0598500-01	Rice	mitochondrion	76.49	75.89
TraesCS1B01G188100.1	Wheat	mitochondrion	74.3	72.99
TraesCS1A01G168800.1	Wheat	mitochondrion	74.3	72.99
TraesCS1D01G166800.1	Wheat	mitochondrion	73.71	72.41
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	73.71	71.29
GSMUA_Achr1P02980_001	Banana	mitochondrion	53.59	50.75
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	46.61	46.43
KRH10858	Soybean	mitochondrion	44.42	45.88
VIT_10s0597g00040.t01	Wine grape	extracellular	45.22	44.86
PGSC0003DMT400032340	Potato	mitochondrion	43.03	44.63
KRH55328	Soybean	plastid	43.23	44.11
CDX98698	Canola	mitochondrion	40.24	41.39
AT4G21705.1	Thale cress	mitochondrion	40.24	41.06
Bra038762.1-P	Field mustard	mitochondrion	39.84	40.98
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	39.44	40.33
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	39.24	40.12
Solyc07g063220.2.1	Tomato	plastid	42.63	38.56
CDX94049	Canola	cytosol	39.44	28.21
EES02848	Sorghum	mitochondrion	29.28	27.74
OQU91552	Sorghum	mitochondrion	28.09	27.65
EES12592	Sorghum	plastid	28.29	27.57
EER87766	Sorghum	cytosol	29.08	27.24
EES07683	Sorghum	mitochondrion	26.89	25.62
OQU79216	Sorghum	cytosol	26.29	24.04
EES10908	Sorghum	mitochondrion	19.52	23.61
OQU86720	Sorghum	mitochondrion	22.51	18.43
OQU88705	Sorghum	plastid	23.11	18.21
OQU79953	Sorghum	cytosol	17.93	14.4

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8065574	UniProt:C5Z972	EnsemblPlants:EER90330	ProteinID:EER90330
ProteinID:EER90330.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G252200	unigene:Sbi.2870
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A897BB	RefSeq:XP_002438963.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:59123073..59126604

Molecular Weight (calculated)

56799.2 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.374

Length

502 amino acids

Sequence
(BLAST)

001: MASSSLFAAA RRLLSLGRRR GLLPVSPSRA VASSSRSNSG EEGTPPARPP TLGSTLWPLG NPGTLLVPEI ELWAARPENH LRDVDLRRIV KELRTRRRHR
101: QALEVSEWMN LKGHVKFLPK DHAVHLDLIG HIHGVGAAET YFNNLSDKDK TEKPYGALLN CYTRERLVDK ALAHFQKMKE LGFVFTALPY NNLMSLYTNI
201: EQHERVPSVM AEMKSNGIVP DNFSYRICIN SYGTRADFFG LENTLEEMEC EPQIVVDWNT YTVVASQYIK GDLREKAYSA LKKAEAKMGI KDLAAYRHLI
301: SLYGHLGDKS EVKRLWAVQM SNCQRHLNTD YTNILAVLVK LDEIAEAEDL LKEWETSKNE FDFKVPNVLL TWYCQKGLLD KAEALLDGFL IKGKMPPSTS
401: WEIVASGYTE KGDVARAYEL TKNALYMYAP NSGWVPEPSM IEMILKYLGD EREVKDVEAF IDLLKVAVPM NSDMTEALSR ARSREEKKGE GAREALREDL
501: IA

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.