Factsheet for VIT_19s0014g02920.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0597g00040.t01	Wine grape	extracellular	61.9	61.66
KRH55328	Soybean	plastid	56.75	58.13
PGSC0003DMT400032340	Potato	mitochondrion	55.56	57.85
GSMUA_Achr1P02980_001	Banana	mitochondrion	55.95	53.21
Solyc07g063220.2.1	Tomato	plastid	55.75	50.63
Os07t0598500-01	Rice	mitochondrion	47.42	47.23
Zm00001d013923_P001	Maize	mitochondrion	46.63	47.0
TraesCS1D01G166800.1	Wheat	mitochondrion	47.62	46.97
EER91421	Sorghum	mitochondrion	46.03	46.77
EER90330	Sorghum	mitochondrion	46.43	46.61
TraesCS1B01G188100.1	Wheat	mitochondrion	47.02	46.38
TraesCS1A01G168800.1	Wheat	mitochondrion	46.83	46.18
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	47.22	45.86
EER90329	Sorghum	mitochondrion	44.84	44.93
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	35.32	35.67
VIT_16s0039g02800.t01	Wine grape	cytosol	33.13	33.53
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	33.33	33.53
VIT_11s0078g00180.t01	Wine grape	cytosol	12.5	32.98
VIT_15s0021g01300.t01	Wine grape	plastid	32.94	31.5
VIT_18s0001g07000.t01	Wine grape	mitochondrion	31.15	31.27
VIT_07s0005g01630.t01	Wine grape	mitochondrion	29.17	31.14
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.36	30.72
VIT_00s0394g00020.t01	Wine grape	cytosol	29.76	30.67
VIT_06s0004g04690.t01	Wine grape	mitochondrion	20.04	19.2
VIT_08s0007g05090.t01	Wine grape	mitochondrion	23.02	18.59

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100265843	wikigene:100265843	MapMan:35.1	ProteinID:CCB46353	ProteinID:CCB46353.1
ncoils:Coil	UniProt:F6H257	EMBL:FN595229	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100265843	wikigene:LOC100265843	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C7B50
ArrayExpress:VIT_19s0014g02920	EnsemblPlantsGene:VIT_19s0014g02920	EnsemblPlants:VIT_19s0014g02920.t01	RefSeq:XP_002282230	RefSeq:XP_002282230.1	:

Description

No Description!

Coordinates

chr19:+:3022698..3025877

Molecular Weight (calculated)

57534.4 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.368

Length

504 amino acids

Sequence
(BLAST)

001: MASSIFNRLK SNRHVSQTLI SNVCSVRSVY TGRFANINLY SRISPLGTPN LSLVPVLDQW VEEGKKVRDV ELHRIIRDLR SRKRYAQALE VSEWMSSKEL
101: CPFSPSARAV QLDLIGQVRG LESAENYFNN MSAEEKIDKM YGALLNCYVR ERVIDKSLSH LQKMKELGFA STPLPYNGLM CLYINTDQLE KIPDVLSEMQ
201: ENGISPDNFS YRLCINSYGA RSDLNSMEKI LEEMESKSHI HIDWMTYSMV ANFYIKAGLN EKALFFLKKA ETKLHKDPLG YNHLISLYAS LGSKAEMMRL
301: WERRKTASKK LINRDYITML GSLVKLGELE DTEALLKEWE SSGNCYDFRV PNTLLIGFCQ KGLIEKAESM LRDIVEEGKT PTPNSWSIVA AGYIEKQNME
401: KAFECMKEAI AVLAENKGWR PKPKVISSIL SWLGDNRDVE EVETFVSALK AVIPMDREMY HAQIRASIRA GKEVDGILDS MKADKIDEDE ETRKILSLKH
501: DKAE

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.