Factsheet for VIT_08s0007g05090.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66764	Soybean	cytosol	43.11	64.82
PGSC0003DMT400022632	Potato	mitochondrion	60.26	60.26
KRH69049	Soybean	mitochondrion	58.65	60.1
Solyc12g020050.1.1	Tomato	plastid	59.13	59.13
KRH31614	Soybean	mitochondrion	55.93	58.17
GSMUA_Achr5P27560_001	Banana	cytosol	47.28	57.5
CDY39654	Canola	mitochondrion	54.81	56.91
KRG95098	Soybean	mitochondrion	55.61	56.89
GSMUA_Achr8P21680_001	Banana	mitochondrion	56.25	56.8
AT1G15480.1	Thale cress	mitochondrion	53.21	55.89
AT1G80270.2	Thale cress	mitochondrion	53.37	55.87
CDY57695	Canola	mitochondrion	53.69	55.56
TraesCS3B01G220600.2	Wheat	mitochondrion	51.28	52.2
TraesCS3D01G195000.1	Wheat	mitochondrion	51.28	52.2
TraesCS3A01G191200.1	Wheat	mitochondrion	51.12	52.12
HORVU3Hr1G040710.1	Barley	mitochondrion	51.12	52.12
Os12t0170100-01	Rice	mitochondrion	50.64	51.72
PGSC0003DMT400021596	Potato	mitochondrion	50.8	51.71
Os01t0280400-00	Rice	mitochondrion	50.48	51.55
OQU86720	Sorghum	mitochondrion	49.36	50.24
Zm00001d008224_P002	Maize	mitochondrion	49.52	49.68
Zm00001d040475_P001	Maize	mitochondrion	47.6	48.45
GSMUA_Achr11P...	Banana	mitochondrion	48.24	47.93
Bra003559.1-P	Field mustard	cytosol	53.37	46.77
AT3G15590.2	Thale cress	cytosol, mitochondrion	44.55	45.57
Bra027226.1-P	Field mustard	plastid	41.19	42.69
CDX97686	Canola	plastid	40.54	40.81
CDY30088	Canola	plastid	40.06	40.52
Bra026128.1-P	Field mustard	cytosol	53.85	36.09
CDX79395	Canola	cytosol	54.17	32.98
VIT_11s0078g00180.t01	Wine grape	cytosol	8.01	26.18
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	18.91	23.69
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	18.91	23.65
VIT_10s0597g00040.t01	Wine grape	extracellular	18.91	23.32
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	18.59	23.02
VIT_00s0394g00020.t01	Wine grape	cytosol	17.95	22.9
VIT_16s0039g02800.t01	Wine grape	cytosol	18.11	22.69
VIT_07s0005g01630.t01	Wine grape	mitochondrion	16.99	22.46
VIT_06s0004g04690.t01	Wine grape	mitochondrion	18.75	22.24
VIT_15s0021g01300.t01	Wine grape	plastid	18.11	21.44
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	16.99	21.16
VIT_18s0001g07000.t01	Wine grape	mitochondrion	16.99	21.12

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100252030	wikigene:100252030	MapMan:16.12.5.4.19	ProteinID:CBI30135	ProteinID:CBI30135.3
UniProt:D7TIQ9	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100252030	wikigene:LOC100252030	PFAM:PF01535	PFAM:PF13812
PFAM:PF17177	InterPro:PPR_long	PFscan:PS51257	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGR:TC62844	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE3727
ArrayExpress:VIT_08s0007g05090	EnsemblPlantsGene:VIT_08s0007g05090	EnsemblPlants:VIT_08s0007g05090.t01	unigene:Vvi.12014	RefSeq:XP_002266581	RefSeq:XP_002266581.1
RefSeq:XP_002266581.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:19010367..19017871

Molecular Weight (calculated)

70749.0 Da

IEP (calculated)

7.513

GRAVY (calculated)

-0.469

Length

624 amino acids

Sequence
(BLAST)

001: MWALRRSSNR LKNQGFSIGT LQACHAKSEM LSTYYKDMTG ICKSPQVIND CHLSSRKFYH PTDIYSVFSM GSCSFSSQAG AKSSGEEDDL EDGFSELEAS
101: GNAGGFQDSD AESEHEDELL SDPKSDDDEI ESTQNELEPL DTDTDVSEKR SPRKRVSSEL FKAIMAASDQ PIHSVLNKWD QEGKDMSRAE IAQTMLNLRK
201: IRMFLKALQF SEWMEEHKKL DMVERDYASR VDLIAKVRGL QKAEHYIEKI PKSFRGELVY RTLLANCVST TNAKKAEEVF NKMKDLGFPI TTFACNQLLL
301: LYKRVDKKKI ADVLLLMEKE DVKPSLFTYG LLIDTKGQSN DITGMEQIVE TMKAEGIEPN LQVQSILVRH YVFGGLKEKA EAILKEMEGG NLKENRWVCR
401: VLLPPYAALG KADDVERIWK VCESNPRLPE FVAAIEAYGK LKKVEEAEAI FNKMSKTFKR LSSKHYSALL KVYADHKMLI KGKDLVKQMS DSGCRIGPLT
501: WDALVKLYVE AGEVEKADKI LQKAMQQSPI KPMFSTYMAI MDQYAKRGDI HNSEKMFHQM RQSGYVSRLR QFQCLIQAYV NAKAPAYGIK ERMKADNIFP
601: NRVVAGQLAQ VDAFRKSAVS DLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.