Factsheet for Zm00001d008224_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86720	Sorghum	mitochondrion	82.48	83.69
Zm00001d040475_P001	Maize	mitochondrion	80.23	81.4
TraesCS3D01G195000.1	Wheat	mitochondrion	65.92	66.88
Os12t0170100-01	Rice	mitochondrion	65.59	66.78
TraesCS3B01G220600.2	Wheat	mitochondrion	65.59	66.56
Os01t0280400-00	Rice	mitochondrion	65.27	66.45
TraesCS3A01G191200.1	Wheat	mitochondrion	65.11	66.18
HORVU3Hr1G040710.1	Barley	mitochondrion	64.95	66.01
GSMUA_Achr5P27560_001	Banana	cytosol	44.69	54.19
GSMUA_Achr8P21680_001	Banana	mitochondrion	53.38	53.72
KRH66764	Soybean	cytosol	35.21	52.77
VIT_08s0007g05090.t01	Wine grape	mitochondrion	49.68	49.52
KRH69049	Soybean	mitochondrion	46.3	47.29
KRG95098	Soybean	mitochondrion	45.98	46.89
CDY57695	Canola	mitochondrion	45.34	46.77
AT1G80270.2	Thale cress	mitochondrion	44.69	46.64
GSMUA_Achr11P...	Banana	mitochondrion	46.78	46.34
KRH31614	Soybean	mitochondrion	44.53	46.17
Solyc12g020050.1.1	Tomato	plastid	45.34	45.19
CDY39654	Canola	mitochondrion	43.41	44.93
PGSC0003DMT400022632	Potato	mitochondrion	44.69	44.55
AT1G15480.1	Thale cress	mitochondrion	42.12	44.11
Bra003559.1-P	Field mustard	cytosol	45.02	39.33
AT3G15590.2	Thale cress	cytosol, mitochondrion	38.42	39.18
PGSC0003DMT400021596	Potato	mitochondrion	38.59	39.15
Bra027226.1-P	Field mustard	plastid	35.37	36.54
CDX97686	Canola	plastid	35.21	35.32
CDY30088	Canola	plastid	34.57	34.85
Bra026128.1-P	Field mustard	cytosol	43.09	28.79
CDX79395	Canola	cytosol	45.02	27.32
Zm00001d024521_P001	Maize	mitochondrion	20.58	24.9
Zm00001d023915_P001	Maize	mitochondrion	18.81	23.35
Zm00001d009122_P001	Maize	mitochondrion	19.13	23.11
Zm00001d013923_P001	Maize	mitochondrion	18.49	23.0
Zm00001d032543_P001	Maize	mitochondrion	18.01	21.66
Zm00001d002789_P001	Maize	plastid	17.85	21.64
Zm00001d052030_P001	Maize	plastid	18.01	21.33
Zm00001d003500_P001	Maize	mitochondrion	14.31	21.04
Zm00001d019185_P001	Maize	cytosol	33.12	19.86
Zm00001d045492_P004	Maize	cytosol	18.97	19.8
Zm00001d011182_P001	Maize	endoplasmic reticulum	12.86	16.26

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.5.4.19	ProteinID:AQK89223.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7V8U5	PFAM:PF17177
InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000220F093	EnsemblPlantsGene:Zm00001d008224	EnsemblPlants:Zm00001d008224_P002	EnsemblPlants:Zm00001d008224_T002	SEG:seg

Description

DNA-binding protein

Coordinates

chr8:-:1665314..1669410

Molecular Weight (calculated)

70093.7 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.379

Length

622 amino acids

Sequence
(BLAST)

001: MWALRRAGNP LRFRAQKVAS AHVCASLEVL LAADAKNVEE HHEADCQKMC CCHKPRSPAF QLSFSSGQFA CSRGFSSQPG ANSGDKADEL EDGFSDLEVP
101: PAAVQNDDGL ASEDSSDEDA ADEFGLPDVD ADAKPEKEHT RRLSDSILLK TLSDSILLKT VLEAPRHQVT SALEKWAKDG NAFDRGELYY VLLNLRKRHW
201: YSKALELVEW VQKSQLFEFV ERDYAAHLDL TAKVYGLHKA EQTIEKIPAS CRGEIVYRTL LANCVSASNI KKSEQVFNRM KDLGFPVTQF SFNQLLLLYK
301: RLDRKKIADV LAMMEKEDVK PSLFTYKILV DAKGSVGDIE AMEKVIESME KDSIEPDLTF NATIARHYIF YGQREKAEAL LKAMEGDDIQ KNRAACKTLL
401: PLHAFLGNSD AVERIWKACE DNTRVAESVS AIEAFGKLGD VEKAEKVFED MLVHWKTLSS KFYNALLKVY ADHNLLDKGK ELAKRMDENR VRFGAPTLDA
501: LVKLYVEAGE VEKAESLVHK LSIQNHIKPI YNTYMTLLDS YSKKGDVRNS EKVFNKLRQS GYTGRIRMYQ VLLHAYVRAK APAYGFRERM KADNIFPNSV
601: VSTLIAATDP FVKKKSISDL LD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.