Factsheet for GSMUA_Achr5P27560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P21680_001	Banana	mitochondrion	68.03	56.47
KRH66764	Soybean	cytosol	45.42	56.14
GSMUA_Achr11P...	Banana	mitochondrion	61.4	50.16
Os01t0280400-00	Rice	mitochondrion	56.34	47.3
VIT_08s0007g05090.t01	Wine grape	mitochondrion	57.5	47.28
TraesCS3A01G191200.1	Wheat	mitochondrion	56.34	47.22
HORVU3Hr1G040710.1	Barley	mitochondrion	56.34	47.22
Os12t0170100-01	Rice	mitochondrion	56.14	47.14
TraesCS3D01G195000.1	Wheat	mitochondrion	55.95	46.82
TraesCS3B01G220600.2	Wheat	mitochondrion	55.95	46.82
OQU86720	Sorghum	mitochondrion	54.97	46.0
KRH69049	Soybean	mitochondrion	54.39	45.81
KRH31614	Soybean	mitochondrion	52.83	45.17
AT1G80270.2	Thale cress	mitochondrion	52.44	45.13
Zm00001d008224_P002	Maize	mitochondrion	54.19	44.69
KRG95098	Soybean	mitochondrion	53.02	44.59
Zm00001d040475_P001	Maize	mitochondrion	53.22	44.54
CDY57695	Canola	mitochondrion	52.24	44.44
PGSC0003DMT400022632	Potato	mitochondrion	53.61	44.07
Solyc12g020050.1.1	Tomato	plastid	53.22	43.75
AT1G15480.1	Thale cress	mitochondrion	50.29	43.43
CDY39654	Canola	mitochondrion	50.29	42.93
PGSC0003DMT400021596	Potato	mitochondrion	47.56	39.8
Bra027226.1-P	Field mustard	plastid	45.81	39.04
AT3G15590.2	Thale cress	cytosol, mitochondrion	45.81	38.52
Bra003559.1-P	Field mustard	cytosol	52.24	37.64
CDX97686	Canola	plastid	45.03	37.26
CDY30088	Canola	plastid	44.64	37.12
Bra026128.1-P	Field mustard	cytosol	50.29	27.71
GSMUA_Achr1P17120_001	Banana	mitochondrion	26.51	26.15
CDX79395	Canola	cytosol	51.85	25.95
GSMUA_AchrUn_...	Banana	cytosol	17.93	24.66
GSMUA_Achr1P16170_001	Banana	cytosol	22.22	23.41
GSMUA_Achr9P23230_001	Banana	mitochondrion	23.39	22.99
GSMUA_Achr1P02980_001	Banana	mitochondrion	23.59	22.83
GSMUA_Achr11P...	Banana	mitochondrion	21.44	21.19
GSMUA_Achr5P20750_001	Banana	mitochondrion	21.64	20.33
GSMUA_Achr7P12830_001	Banana	mitochondrion	20.47	19.3
GSMUA_Achr10P...	Banana	cytosol	16.57	19.27

Protein Annotations

EnsemblPlants:GSMUA_Achr5P27560_001	EnsemblPlants:GSMUA_Achr5T27560_001	EnsemblPlantsGene:GSMUA_Achr5G27560_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf
PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	PFAM:PF01535	PFAM:PF17177	PFscan:PS51375	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	UniParc:UPI000296B345	UniProt:M0T281	MapMan:16.12.5.4.19	:	:

Description

Pentatricopeptide repeat-containing protein At1g80270, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G27560_001]

Coordinates

chr5:-:28024805..28027988

Molecular Weight (calculated)

58290.5 Da

IEP (calculated)

7.154

GRAVY (calculated)

-0.366

Length

513 amino acids

Sequence
(BLAST)

001: MVGPQEKEDD GELMSEEEMN NAAADELSFL DSETDLSVEK KTQRIESQLS KIIIENPRYS LNGTLDKWVE EGNPLGRGEI SLVLLNLRKH RLYGKALQFV
101: EWLEATNHLE FLERDYATHL DLVAKVHGIQ KAEKYIEEIP KSLRGEVLYR TLLYHCVSAT NVKKAEDVFN TIKALGVPIS AFACNQLLLL YKWVDQKKIA
201: DVLVMMEKEN VKPNLVTYRL LIDTKGRAYD ISGMEQILDT MKAEGVEPDL LTNAMVARHY VFAGLNEKAE ATMREMEGDD IKENRAACRD LLRLYAALGK
301: ADDVERIWNI CMSNPRIGEC LAAIEAWGKL GQVENAEEVF ENMLKIQKKL STKYYNTLLK VYANNKLVSK GKELAKRMSD NGCYIGPMTW DGLIKLYAKA
401: GELEKADSIL LKASKQNESR PLFGSYMTVL GRYSARGDIH NAEKIFQRLR QIGYAVKLKP YQLLLRTYIN AKSPAYGFRE RMKADNISPN KAMAIQLTTA
501: DAFRKTQISE LLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.