Factsheet for GSMUA_Achr1P17120_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0527900-01	Rice	mitochondrion	60.77	61.48
TraesCS5D01G112000.1	Wheat	mitochondrion	59.81	60.98
TraesCS5A01G099700.1	Wheat	mitochondrion	59.62	60.78
VIT_16s0039g02800.t01	Wine grape	cytosol	58.08	60.64
TraesCS5B01G104900.1	Wheat	mitochondrion	59.42	60.59
HORVU5Hr1G027150.1	Barley	mitochondrion	59.23	59.92
Zm00001d023915_P001	Maize	mitochondrion	56.35	58.48
OQU79216	Sorghum	cytosol	58.46	55.37
Bra018528.1-P	Field mustard	mitochondrion	53.85	54.47
CDX97288	Canola	mitochondrion	53.65	54.28
Solyc06g005140.2.1	Tomato	mitochondrion	54.04	54.04
PGSC0003DMT400077284	Potato	mitochondrion	54.23	53.82
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	53.46	53.05
AT4G02820.1	Thale cress	mitochondrion	54.23	53.01
PGSC0003DMT400092266	Potato	mitochondrion	18.85	52.97
PGSC0003DMT400031020	Potato	cytosol	12.12	52.94
CDX91277	Canola	mitochondrion	52.69	52.79
PGSC0003DMT400031016	Potato	cytosol	27.31	46.71
GSMUA_AchrUn_...	Banana	cytosol	24.62	34.32
GSMUA_Achr1P02980_001	Banana	mitochondrion	33.08	32.45
GSMUA_Achr1P16170_001	Banana	cytosol	29.23	31.21
GSMUA_Achr10P...	Banana	cytosol	26.15	30.84
GSMUA_Achr5P20750_001	Banana	mitochondrion	31.92	30.4
GSMUA_Achr11P...	Banana	mitochondrion	30.19	30.25
GSMUA_Achr7P12830_001	Banana	mitochondrion	31.15	29.78
GSMUA_Achr5P27560_001	Banana	cytosol	26.15	26.51
GSMUA_Achr8P21680_001	Banana	mitochondrion	27.31	22.98
CDY36566	Canola	mitochondrion	24.42	21.13
GSMUA_Achr11P...	Banana	mitochondrion	25.38	21.02
GSMUA_Achr9P23230_001	Banana	mitochondrion	20.19	20.11
CDY36565	Canola	cytosol	0.96	1.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	EnsemblPlantsGene:GSMUA_Achr1G17120_001	EnsemblPlants:GSMUA_Achr1P17120_001
EnsemblPlants:GSMUA_Achr1T17120_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0S0M0	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002956E1F	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G17120_001]

Coordinates

chr1:-:12778770..12782817

Molecular Weight (calculated)

59081.4 Da

IEP (calculated)

9.414

GRAVY (calculated)

-0.217

Length

520 amino acids

Sequence
(BLAST)

001: MLSARRLRLL LGSAYAPARP TSSLPDALVP RAAAGAGTTT GRRAGGCRDT LGRRLLSLIY PKRSAVVVLR KWAEEDKPIQ KYQLNRVVRE LRKYKRYKHA
101: LEICEWMTTQ SHIKLLPGDY AVHLDLVAKV CGLASAQKFF EDLPVRMKGP STCTALLHTY VQCKLTDKAE SLMEEMSAQG LLRCALPYNH MLTLYISNGE
201: LNKIPDLLRD LKRNASPDEI TYNLWLSVFA KKNDVIGAEK VLHQMGKDNV TADWVTYSIL ANIYIKAACH DKAKEALVEM EKRVFKKDRV AYCSLISLHA
301: GLLDKDNVYR MWNKLKATFR KMSDMEFKCM LSSLTKLGDI EEAERIYKEW ESVSGTQDSR LPNILLAFYV KNDMMEKAEK FLMHIVETGV KPSYTTWELL
401: ASGNLHKNRM DKVLDCLKKA LSSLEKWDPN VGLVKAVFTE LEAMGNVEDA ENFLVILRDA GYVTTEIYNS LLRTYVKAGK MPLIVAERMK KDNVKMDEET
501: RHLLMVTSKF CISEVSPLIS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.