Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012266 | Potato | cytosol, mitochondrion, plastid | 94.12 | 21.37 |
| PGSC0003DMT400077284 | Potato | mitochondrion | 89.08 | 20.23 |
| VIT_16s0039g02800.t01 | Wine grape | cytosol | 73.11 | 17.47 |
| Bra018528.1-P | Field mustard | mitochondrion | 60.5 | 14.01 |
| CDX97288 | Canola | mitochondrion | 60.5 | 14.01 |
| AT4G02820.1 | Thale cress | mitochondrion | 61.34 | 13.72 |
| CDX91277 | Canola | mitochondrion | 59.66 | 13.68 |
| PGSC0003DMT400047256 | Potato | extracellular | 34.45 | 12.69 |
| GSMUA_Achr1P17120_001 | Banana | mitochondrion | 52.94 | 12.12 |
| PGSC0003DMT400031016 | Potato | cytosol | 27.73 | 10.86 |
| Os12t0527900-01 | Rice | mitochondrion | 46.22 | 10.7 |
| TraesCS5B01G104900.1 | Wheat | mitochondrion | 44.54 | 10.39 |
| TraesCS5A01G099700.1 | Wheat | mitochondrion | 44.54 | 10.39 |
| HORVU5Hr1G027150.1 | Barley | mitochondrion | 44.54 | 10.31 |
| PGSC0003DMT400011461 | Potato | mitochondrion | 34.45 | 10.25 |
| TraesCS5D01G112000.1 | Wheat | mitochondrion | 43.7 | 10.2 |
| Zm00001d023915_P001 | Maize | mitochondrion | 42.02 | 9.98 |
| PGSC0003DMT400002590 | Potato | cytosol | 37.82 | 9.15 |
| OQU79216 | Sorghum | cytosol | 42.02 | 9.11 |
| PGSC0003DMT400007271 | Potato | mitochondrion | 36.13 | 8.9 |
| PGSC0003DMT400004477 | Potato | plastid | 35.29 | 8.73 |
| PGSC0003DMT400023279 | Potato | mitochondrion | 34.45 | 8.28 |
| PGSC0003DMT400032340 | Potato | mitochondrion | 33.61 | 8.26 |
| PGSC0003DMT400080049 | Potato | cytosol, plastid | 37.82 | 8.26 |
| PGSC0003DMT400076417 | Potato | cytosol, mitochondrion | 32.77 | 7.94 |
| PGSC0003DMT400047255 | Potato | cytosol, mitochondrion, plastid | 31.93 | 7.63 |
| PGSC0003DMT400076352 | Potato | cytosol, mitochondrion | 27.73 | 6.9 |
| PGSC0003DMT400058755 | Potato | cytosol | 20.17 | 6.08 |
| PGSC0003DMT400022632 | Potato | mitochondrion | 27.73 | 5.29 |
| PGSC0003DMT400069375 | Potato | cytosol | 21.01 | 5.27 |
| CDY36566 | Canola | mitochondrion | 22.69 | 4.49 |
| PGSC0003DMT400021596 | Potato | mitochondrion | 22.69 | 4.4 |
| PGSC0003DMT400092266 | Potato | mitochondrion | 1.68 | 1.08 |
| CDY36565 | Canola | cytosol | 1.68 | 0.6 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031020 | EnsemblPlantsGene:PGSC0003DMG400011885 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF935 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PGSC:PGSC0003DMG400011885 | SEG:seg | UniParc:UPI0002948AC5 |
| UniProt:M1AV38 | MapMan:35.1 | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011885]
Coordinates
chr1:+:8510290..8510649
Molecular Weight (calculated)
13564.5 Da
IEP (calculated)
9.332
GRAVY (calculated)
-0.190
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MITLYISQGQ LEKVSGLIQE LKKNTSPDIV TYNLELAVFA SQNNVEAAEK VLLELKKAKL DPDWITFSTL TNIYIKISLQ DKANLTLQEM EKKISRKART
101: AYASLISLHT NLQNKYEVF
101: AYASLISLHT NLQNKYEVF
001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.