Factsheet for VIT_16s0039g02800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031020	Potato	cytosol	17.47	73.11
Solyc06g005140.2.1	Tomato	mitochondrion	68.27	65.38
PGSC0003DMT400077284	Potato	mitochondrion	67.67	64.31
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	67.27	63.93
AT4G02820.1	Thale cress	mitochondrion	65.06	60.9
Bra018528.1-P	Field mustard	mitochondrion	62.85	60.89
CDX91277	Canola	mitochondrion	63.45	60.89
CDX97288	Canola	mitochondrion	62.65	60.7
GSMUA_Achr1P17120_001	Banana	mitochondrion	60.64	58.08
PGSC0003DMT400092266	Potato	mitochondrion	20.88	56.22
PGSC0003DMT400031016	Potato	cytosol	33.13	54.28
Os12t0527900-01	Rice	mitochondrion	52.41	50.78
TraesCS5A01G099700.1	Wheat	mitochondrion	51.81	50.59
TraesCS5D01G112000.1	Wheat	mitochondrion	51.61	50.39
HORVU5Hr1G027150.1	Barley	mitochondrion	52.01	50.39
TraesCS5B01G104900.1	Wheat	mitochondrion	51.41	50.2
Zm00001d023915_P001	Maize	mitochondrion	49.6	49.3
OQU79216	Sorghum	cytosol	50.2	45.54
VIT_11s0078g00180.t01	Wine grape	cytosol	13.86	36.13
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	33.53	33.13
VIT_18s0001g07000.t01	Wine grape	mitochondrion	33.33	33.07
VIT_10s0597g00040.t01	Wine grape	extracellular	32.33	31.82
VIT_00s0394g00020.t01	Wine grape	cytosol	31.12	31.7
VIT_07s0005g01630.t01	Wine grape	mitochondrion	29.72	31.36
VIT_15s0021g01300.t01	Wine grape	plastid	32.93	31.12
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.92	30.92
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	30.72	30.66
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	28.92	28.74
VIT_06s0004g04690.t01	Wine grape	mitochondrion	22.29	21.1
CDY36566	Canola	mitochondrion	22.89	18.97
VIT_08s0007g05090.t01	Wine grape	mitochondrion	22.69	18.11
CDY36565	Canola	cytosol	0.8	1.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100264809	wikigene:100264809	MapMan:35.1	EMBL:AM429766	ProteinID:CAN64701
ProteinID:CAN64701.1	ProteinID:CCB50629	ProteinID:CCB50629.1	UniProt:F6HEI3	EMBL:FN595750	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100264809	wikigene:LOC100264809
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109602	ArrayExpress:VIT_16s0039g02800	EnsemblPlantsGene:VIT_16s0039g02800
EnsemblPlants:VIT_16s0039g02800.t01	unigene:Vvi.14300	RefSeq:XP_002279399	RefSeq:XP_002279399.2	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:3328243..3332478

Molecular Weight (calculated)

57253.7 Da

IEP (calculated)

9.422

GRAVY (calculated)

-0.429

Length

498 amino acids

Sequence
(BLAST)

001: MAIVKPKAVV KPKTSDGNST SSGRDTLGRR LLSLVYAKRS AVIAIQRWRE EGHTVRKYEL NRIVRELRKL KRYKHALEIC EWMTKQHDIK LLAGDYAVHL
101: DLIAKIRGLA SAEKFFEDLS DKMKGQPTCT ALLHTYVQNK VSEKAEALME KMSECGFLKC PLPYNHMISL YISDGQLEKV PGMIQELKKN TSPDVVTYNL
201: WLTVCASQND VETAEKVLLE IKKAKIDPDW VTYSSLTNLY IKKGLLDKAA TTLNEMEKRT SRKGRIAYSS LISLHTNMQD KDGVHRIWKK LKSIFHKMND
301: AEYTCMISSL VKLGEFEEAE NLYSEWTSVS PTGDSRVPNI LLAAYINKNE MEMAEKFYNQ MVERGITPSY TTWELLTWGY LKKKQMEKVL DYFEKAVGSV
401: KKWNPDEKLV REVYKNLEEQ GNIEGAEKVL VILRKAGHVS TEIYNWLLRA YAKAGKMPLI VAEWMKKDKV EMDEETHRLI KETSKMCVSE VSSKFCLA

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.