Factsheet for VIT_00s0394g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45616	Soybean	nucleus	75.87	75.71
Solyc11g006380.1.1	Tomato	cytosol	71.37	70.94
PGSC0003DMT400002590	Potato	cytosol	70.96	70.53
CDY24553	Canola	mitochondrion	41.51	70.49
CDY50357	Canola	mitochondrion	28.63	70.0
AT1G60770.1	Thale cress	cytosol	68.71	68.43
KRG99413	Soybean	cytosol, mitochondrion	48.88	68.09
CDX96239	Canola	mitochondrion	67.69	67.41
Bra027131.1-P	Field mustard	mitochondrion	67.28	67.01
CDY46999	Canola	mitochondrion	67.08	66.8
CDY34141	Canola	mitochondrion	66.87	66.46
GSMUA_Achr1P16170_001	Banana	cytosol	65.85	66.12
Bra031484.1-P	Field mustard	mitochondrion	66.05	65.65
CDY50358	Canola	cytosol	28.63	59.57
Os04t0320200-01	Rice	mitochondrion	62.17	58.02
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.76	56.24
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.76	56.24
CDY24554	Canola	cytosol	17.59	56.21
EER87766	Sorghum	cytosol	61.55	56.16
TraesCS4A01G428500.1	Wheat	mitochondrion	61.76	56.03
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	62.17	55.17
Zm00001d045492_P004	Maize	cytosol	60.94	50.0
VIT_07s0005g01630.t01	Wine grape	mitochondrion	38.85	40.25
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	39.47	38.76
VIT_11s0078g00180.t01	Wine grape	cytosol	14.72	37.7
VIT_16s0039g02800.t01	Wine grape	cytosol	31.7	31.12
VIT_10s0597g00040.t01	Wine grape	extracellular	32.11	31.03
VIT_15s0021g01300.t01	Wine grape	plastid	33.33	30.93
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	31.08	30.46
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	30.88	30.14
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	30.67	29.76
VIT_18s0001g07000.t01	Wine grape	mitochondrion	30.27	29.48
VIT_06s0004g04690.t01	Wine grape	mitochondrion	22.29	20.72
VIT_08s0007g05090.t01	Wine grape	mitochondrion	22.9	17.95

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100266066	wikigene:100266066	MapMan:35.1	ProteinID:CCB48394	ProteinID:CCB48394.1
ncoils:Coil	UniProt:F6H851	EMBL:FN595268	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100266066	wikigene:LOC100266066	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CDE70
ArrayExpress:VIT_00s0394g00020	EnsemblPlantsGene:VIT_00s0394g00020	EnsemblPlants:VIT_00s0394g00020.t01	unigene:Vvi.21256	RefSeq:XP_002267979	RefSeq:XP_002267979.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:27256725..27264573

Molecular Weight (calculated)

55899.8 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.334

Length

489 amino acids

Sequence
(BLAST)

001: MAMPQLSRTK NIAKRSKKYL EEALYDRLFK DGSSEVSVRQ QLNHFLKSSK RVFKWEVGDT VKKLRDRKRF YPALKLSETM AKRGMNMTIS DQAIYLDLIT
101: KTRGVAAAEN YFIDLPETSK NHLTYGALLN CYCKELLTEK AEALMERMKE LKLGLSSMPY NSLMTLYTKI GQPEKIPTII QELKSLDIMP DSYTYNIWMR
201: ALAAVNDISG VERVIEEMKR DGRVASDWTT YSNLASIYVD AGVFEKAEKA LKELEKRNAC RDLTAFQFLI TLYGRIGNLL EVYRVWRSLR LAFPKTANVS
301: YLNMIQVLVN LKDLPGAEKC FREWESGCSI YDIRVANALI GAYAKDGLLE KAEELKEHAR RRGAKPNAKT WEIFLAYHLK NREMKQAVDC VANAISTGRG
401: DGQKWVPSPE IIGVFMQHFE QEKDVDGAEG FLEILKSTVE DLGVEVFESL IRIYAAAGRT SPVMRRRLKM ENVEVSDSCK KLLEEVSVE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.