Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24553 | Canola | mitochondrion | 52.14 | 88.89 |
| CDX96239 | Canola | mitochondrion | 86.97 | 86.97 |
| CDY46999 | Canola | mitochondrion | 86.56 | 86.56 |
| CDY50357 | Canola | mitochondrion | 35.23 | 86.5 |
| CDY34141 | Canola | mitochondrion | 86.35 | 86.18 |
| Bra027131.1-P | Field mustard | mitochondrion | 86.15 | 86.15 |
| Bra031484.1-P | Field mustard | mitochondrion | 86.15 | 85.98 |
| CDY50358 | Canola | cytosol | 39.71 | 82.98 |
| CDY24554 | Canola | cytosol | 24.85 | 79.74 |
| VIT_00s0394g00020.t01 | Wine grape | cytosol | 68.43 | 68.71 |
| KRH45616 | Soybean | nucleus | 65.38 | 65.51 |
| PGSC0003DMT400002590 | Potato | cytosol | 65.58 | 65.45 |
| Solyc11g006380.1.1 | Tomato | cytosol | 65.58 | 65.45 |
| GSMUA_Achr1P16170_001 | Banana | cytosol | 61.51 | 62.01 |
| KRG99413 | Soybean | cytosol, mitochondrion | 42.77 | 59.83 |
| Os04t0320200-01 | Rice | mitochondrion | 60.69 | 56.87 |
| TraesCS7D01G056000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.29 | 55.12 |
| TraesCS4A01G428500.1 | Wheat | mitochondrion | 60.49 | 55.1 |
| TraesCS7A01G061300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.08 | 54.93 |
| EER87766 | Sorghum | cytosol | 59.88 | 54.85 |
| HORVU7Hr1G011310.1 | Barley | cytosol, mitochondrion, nucleus | 60.29 | 53.72 |
| Zm00001d045492_P004 | Maize | cytosol | 59.88 | 49.33 |
| AT4G01990.1 | Thale cress | mitochondrion | 33.6 | 32.87 |
| AT1G02370.1 | Thale cress | mitochondrion | 34.83 | 31.84 |
| AT4G21705.1 | Thale cress | mitochondrion | 29.33 | 29.27 |
| AT1G02150.1 | Thale cress | mitochondrion | 30.14 | 28.24 |
| AT4G02820.1 | Thale cress | mitochondrion | 29.94 | 27.63 |
| AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 27.49 | 27.49 |
| AT2G20710.1 | Thale cress | mitochondrion | 25.66 | 25.71 |
| AT5G09450.1 | Thale cress | mitochondrion | 20.77 | 24.94 |
| AT1G43010.1 | Thale cress | mitochondrion | 11.61 | 22.18 |
| AT1G28020.1 | Thale cress | cytosol, plastid | 22.0 | 21.86 |
| AT1G07590.1 | Thale cress | mitochondrion | 23.22 | 21.35 |
| AT1G80270.2 | Thale cress | mitochondrion | 25.66 | 21.14 |
| AT1G15480.1 | Thale cress | mitochondrion | 24.64 | 20.37 |
| AT3G11380.1 | Thale cress | mitochondrion | 21.59 | 19.59 |
| AT3G15590.2 | Thale cress | cytosol, mitochondrion | 23.83 | 19.18 |
| AT2G20720.1 | Thale cress | cytosol | 10.39 | 17.06 |
| AT1G28000.1 | Thale cress | mitochondrion | 13.24 | 16.75 |
| AT3G11350.1 | Thale cress | mitochondrion | 11.41 | 15.6 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:842371 | ProteinID:AAB71963.1 | ProteinID:AEE33730.1 | ArrayExpress:AT1G60770 |
| EnsemblPlantsGene:AT1G60770 | RefSeq:AT1G60770 | TAIR:AT1G60770 | RefSeq:AT1G60770-TAIR-G | EnsemblPlants:AT1G60770.1 | TAIR:AT1G60770.1 |
| Unigene:At.36592 | EMBL:BT002876 | EMBL:BT004401 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_176276.1 | UniProt:O22714 | PFAM:PF01535 |
| PFAM:PF13041 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF494 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000000BE12 | : | : | : |
Description
Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
Coordinates
chr1:-:22366701..22368714
Molecular Weight (calculated)
55908.5 Da
IEP (calculated)
9.222
GRAVY (calculated)
-0.462
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.