CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0320200-01	Rice	mitochondrion	82.46	84.35
Zm00001d045492_P004	Maize	cytosol	92.16	82.89
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.65	82.5
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	82.28	82.12
TraesCS4A01G428500.1	Wheat	mitochondrion	82.46	82.0
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	83.4	81.13
GSMUA_Achr1P16170_001	Banana	cytosol	64.74	71.25
CDY24553	Canola	mitochondrion	34.51	64.24
VIT_00s0394g00020.t01	Wine grape	cytosol	56.16	61.55
CDX96239	Canola	mitochondrion	55.22	60.29
CDY46999	Canola	mitochondrion	54.85	59.88
AT1G60770.1	Thale cress	cytosol	54.85	59.88
KRH45616	Soybean	nucleus	54.66	59.8
CDY50357	Canola	mitochondrion	22.2	59.5
Bra027131.1-P	Field mustard	mitochondrion	54.48	59.47
Solyc11g006380.1.1	Tomato	cytosol	53.92	58.74
CDY34141	Canola	mitochondrion	53.92	58.74
PGSC0003DMT400002590	Potato	cytosol	53.73	58.54
Bra031484.1-P	Field mustard	mitochondrion	53.73	58.54
KRG99413	Soybean	cytosol, mitochondrion	34.51	52.71
CDY50358	Canola	cytosol	22.95	52.34
CDY24554	Canola	cytosol	13.99	49.02
EES02848	Sorghum	mitochondrion	30.78	31.13
EER91421	Sorghum	mitochondrion	27.05	29.23
EER90330	Sorghum	mitochondrion	27.24	29.08
EER90329	Sorghum	mitochondrion	26.87	28.63
EES12592	Sorghum	plastid	27.43	28.54
OQU91552	Sorghum	mitochondrion	25.37	26.67
OQU79216	Sorghum	cytosol	25.93	25.32
EES07683	Sorghum	mitochondrion	24.25	24.67
EES10908	Sorghum	mitochondrion	19.03	24.58
OQU79953	Sorghum	cytosol	21.27	18.24
OQU88705	Sorghum	plastid	21.27	17.9
OQU86720	Sorghum	mitochondrion	19.78	17.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8068376	UniProt:C5Z388	ncoils:Coil	EnsemblPlants:EER87766
ProteinID:EER87766	ProteinID:EER87766.1	ProteinID:EER89115.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G018900	SUPFAM:SSF48452	unigene:Sbi.8820	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A88E91	RefSeq:XP_002436399.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:1553028..1556670

Molecular Weight (calculated)

60923.5 Da

IEP (calculated)

9.542

GRAVY (calculated)

-0.495

Length

536 amino acids

Sequence
(BLAST)

001: MATRVKDVAR RSTKKYVEEA LYRRLFRKGS TPQAVREEVD GFLDSRKRAF KWEVGVCVRR MRRNALYRPA LKLSEVMTRR GMNPTVSDQA ICLDLIAKSR
101: GIAAAEKYFL DLPETSKTHL TYGALLNSYC KELMTEKAES LMAKMSELNF AFTAMPFNSL MTMYTKVNQP EKVPGIIQYM KADDVLPHVF TYNVWMRALA
201: ALNDIPGVER VIEEMKRDGR VAPDWTTYSN LASIYVDAGL FEKAEAALKE LEKRNTSNDV EAYQFLITLY GRTQNLVEVH RVWRSLKRNN PRMANMSYLN
301: MIQVLANLKD LPAAEACFKE WEARHIHPPK TKAKDSGADN ISTTDPESSS NLPNNQSGIK ETGDEAAKDL QLKHPKYDIR VANAMIKAYI AEGMLDKAVA
401: VKKRAKMHGG RLNAKTWEIF MEHHLKTGDL KMAHWCADRA MKKGHSSGRI WVPPPAVTET LMSYFEENKD VDGAEQYVES LKKVQKDLGT PVFEPLLRTY
501: AAAGKKFPGM RQRLKIENVE VGEETDQLLD SICADQ

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.