CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90330	Sorghum	mitochondrion	81.71	81.87
EER91421	Sorghum	mitochondrion	76.94	78.02
Os07t0598500-01	Rice	mitochondrion	69.38	68.97
TraesCS1B01G188100.1	Wheat	mitochondrion	68.19	67.12
TraesCS1D01G166800.1	Wheat	mitochondrion	67.79	66.73
TraesCS1A01G168800.1	Wheat	mitochondrion	67.79	66.73
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	68.19	66.09
GSMUA_Achr1P02980_001	Banana	mitochondrion	51.69	49.06
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	44.93	44.84
PGSC0003DMT400032340	Potato	mitochondrion	42.54	44.21
KRH10858	Soybean	mitochondrion	42.35	43.83
VIT_10s0597g00040.t01	Wine grape	extracellular	43.74	43.48
KRH55328	Soybean	plastid	40.95	41.87
CDX98698	Canola	mitochondrion	39.56	40.78
AT4G21705.1	Thale cress	mitochondrion	39.76	40.65
Bra038762.1-P	Field mustard	mitochondrion	39.36	40.57
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	38.17	39.1
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	37.97	38.9
Solyc07g063220.2.1	Tomato	plastid	41.95	38.02
CDX94049	Canola	cytosol	38.97	27.92
EER87766	Sorghum	cytosol	28.63	26.87
EES02848	Sorghum	mitochondrion	28.03	26.6
OQU91552	Sorghum	mitochondrion	26.64	26.27
EES12592	Sorghum	plastid	26.84	26.21
EES07683	Sorghum	mitochondrion	26.04	24.86
OQU79216	Sorghum	cytosol	26.04	23.86
EES10908	Sorghum	mitochondrion	19.28	23.37
OQU86720	Sorghum	mitochondrion	23.06	18.92
OQU88705	Sorghum	plastid	21.67	17.11
OQU79953	Sorghum	cytosol	18.49	14.88

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8065573	UniProt:C5Z971	EnsemblPlants:EER90329	ProteinID:EER90329
ProteinID:EER90329.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3010G252100	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A897BA	RefSeq:XP_002438962.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:59120197..59122722

Molecular Weight (calculated)

56654.3 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.332

Length

503 amino acids

Sequence
(BLAST)

001: MASSSLFAAA RRLLSIGRRG GLLPVPPSRA VASSSRSNRA EEGTPPARPP TLWSTLCPLG KPGTLLVPEI ELWAARSGKR LRPCELHFVV KDLRRRHRHR
101: QALEVSEWMN LKGHVKFLPK DHAVHLDLIG HIHGVGAAET YFNNLSDKDK TEKPYGALLY CYTRECLVDK ALAHFQKMKE LGFVFTPLPY SNLMILYANV
201: EQHERVPSVM AEMKSNGIVP NNFSYNICIN AYGTRADFSG LENTLEEMEF ASQVVVDWRT YADVASHYIK GDLREKAYSA LQKAEAKMDE KDSFAYSHLI
301: SLYGHLGDKS EIKRLWVLQM LKCKGCINKG YKYMLTVLVK LDEIAEAEDL LKKWESSKNE FDFKVPNILL KGYCQWGLLD KAEALLDGFL RKGKKPSATS
401: WAIVASAYAE KGDVPRAYEL TKRALSMCVP DSGWIPEPSM IEVILKYLGD EGEVKDVEAF IDLLKVVVPM NSDMTEALSR ARSREEKKKA EETTEAPRED
501: STA

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.