CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	58.13	56.75
PGSC0003DMT400032340	Potato	mitochondrion	50.0	50.83
KRH10858	Soybean	mitochondrion	47.76	48.35
GSMUA_Achr1P02980_001	Banana	mitochondrion	47.97	44.53
Solyc07g063220.2.1	Tomato	plastid	49.39	43.78
EER90330	Sorghum	mitochondrion	44.11	43.23
EER91421	Sorghum	mitochondrion	43.5	43.15
Os07t0598500-01	Rice	mitochondrion	43.5	42.29
Zm00001d013923_P001	Maize	mitochondrion	42.89	42.2
TraesCS1D01G166800.1	Wheat	mitochondrion	43.09	41.49
TraesCS1B01G188100.1	Wheat	mitochondrion	43.09	41.49
EER90329	Sorghum	mitochondrion	41.87	40.95
TraesCS1A01G168800.1	Wheat	mitochondrion	42.48	40.9
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	43.09	40.85
KRH22399	Soybean	cytosol	28.86	29.83
KRH52991	Soybean	mitochondrion	29.67	29.44
KRH26940	Soybean	cytosol	29.27	29.03
KRH31780	Soybean	mitochondrion	27.44	28.36
KRH10583	Soybean	mitochondrion	22.56	27.82
KRH45616	Soybean	nucleus	27.64	27.76
KRH43872	Soybean	mitochondrion	22.15	27.59
KRH69203	Soybean	cytosol	21.75	27.51
KRH48889	Soybean	plastid	29.27	26.37
KRH66454	Soybean	plastid	28.66	25.41
KRG99413	Soybean	cytosol, mitochondrion	17.89	25.07
KRH62276	Soybean	mitochondrion	28.66	24.52
KRH66764	Soybean	cytosol	19.51	23.13
KRH10262	Soybean	mitochondrion	20.12	19.53
KRH23068	Soybean	mitochondrion	20.12	19.53
KRG95098	Soybean	mitochondrion	22.76	18.36
KRH31614	Soybean	mitochondrion	21.54	17.67
KRH69049	Soybean	mitochondrion	20.73	16.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804385	MapMan:35.1	EMBL:ACUP02003962	EnsemblPlantsGene:GLYMA_06G246500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KX65	EnsemblPlants:KRH55328	ProteinID:KRH55328	ProteinID:KRH55328.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1655	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A5BE	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:41640535..41644209

Molecular Weight (calculated)

55798.7 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.295

Length

492 amino acids

Sequence
(BLAST)

001: MPLAPLFSAS RSLAAAAAFL RHCSTAATTN RRNLYSRISP LGDPSISVVP VLDEWIEEGN AVDGPHLHHI IKILRTRNRN TQALEVSEWM SSKGLPISSR
101: DQAVQLDLIG RVHGVESAER YLQSLSDGDK TWKVHGALLN CYVREGLVDK SLSLMQKMKD MGFVSFLNYN NIMSLYTQTQ QYEKVPGVLE QMKKDGVPPN
201: IFSYRICINS YCVRGDLANV EKLLEEMERE PHIGIDWITY SMVTNFYIKA DMREKALVCL MKCEKKTHRG NTVAYNHLIS HNAALRSKGG MMRAWKLQKA
301: NCKKQLNREY ITMLGCLVKL GELDKAEKVL GEWELSGNTC DFRVPNILLI GYCQRGLVEK AEALLRKMVA EGKTPIPNSW SIVASGYVAK ENMEKAFQCM
401: KEAVAVHAQN KRWRPKVDVI SSIFSWVTNN RDIEEAEDFV NSWKSVNAMN RGMYLSLMKM CIRYGKHVDG ILESMKADNI EIDEEIKETL NS

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.