CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10262	Soybean	mitochondrion	93.69	93.69
PGSC0003DMT400069375	Potato	cytosol	65.48	70.04
VIT_06s0004g04690.t01	Wine grape	mitochondrion	72.19	69.58
Solyc06g071900.2.1	Tomato	mitochondrion	66.86	63.36
AT1G07590.1	Thale cress	mitochondrion	65.09	61.8
CDY09903	Canola	mitochondrion	63.71	60.94
CDY06272	Canola	mitochondrion	63.51	60.75
Bra031586.1-P	Field mustard	mitochondrion	63.51	60.64
GSMUA_Achr9P23230_001	Banana	mitochondrion	59.17	57.47
Zm00001d024521_P001	Maize	mitochondrion	57.0	56.23
TraesCS7D01G293300.1	Wheat	mitochondrion	55.62	54.97
TraesCS7A01G296400.1	Wheat	mitochondrion	55.23	54.58
TraesCS7B01G189100.1	Wheat	mitochondrion	55.03	54.39
HORVU7Hr1G066420.6	Barley	plastid	52.47	50.57
OQU79953	Sorghum	cytosol	57.4	46.56
KRH66764	Soybean	cytosol	18.54	22.65
KRH45616	Soybean	nucleus	20.91	21.63
KRH43872	Soybean	mitochondrion	16.77	21.52
KRG99413	Soybean	cytosol, mitochondrion	14.4	20.8
KRH10858	Soybean	mitochondrion	19.72	20.58
KRH55328	Soybean	plastid	19.53	20.12
KRH10583	Soybean	mitochondrion	15.78	20.05
KRH52991	Soybean	mitochondrion	19.53	19.96
KRH48889	Soybean	plastid	20.71	19.23
KRH26940	Soybean	cytosol	18.74	19.15
KRH31614	Soybean	mitochondrion	22.49	19.0
KRH66454	Soybean	plastid	20.71	18.92
KRH22399	Soybean	cytosol	17.55	18.7
KRH69049	Soybean	mitochondrion	22.29	18.55
KRH69203	Soybean	cytosol	14.0	18.25
KRH31780	Soybean	mitochondrion	16.96	18.07
KRG95098	Soybean	mitochondrion	21.1	17.54
KRH62276	Soybean	mitochondrion	18.93	16.7

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100789374	MapMan:35.1	EMBL:ACUP02008456	EnsemblPlantsGene:GLYMA_13G336000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7M3E4	EnsemblPlants:KRH23068	ProteinID:KRH23068	ProteinID:KRH23068.1
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF588
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233ADB2	:	:

Description

hypothetical protein

Coordinates

chr13:+:42937371..42939216

Molecular Weight (calculated)

58246.8 Da

IEP (calculated)

10.059

GRAVY (calculated)

-0.141

Length

507 amino acids

Sequence
(BLAST)

001: MRSVTAIFAQ QRLVQLIRRT PCDIISLKLF CTQATQNHDS LSRRIERLPK GESVGAAFCS WMRDGLPVHG VDVFHAVNRL RKLNMNKRAL QVMEWVIRER
101: PYRPKELDYS YLVEFTTKLH GISHGEKLFS RIPVEFQNEL LYNNLVIACL DKGVIKLSLE YMKKMRELGF LISHLVFNRL IILHSSPGRR KMIPKLLTQM
201: KADKVTPHVS TYNILMKIEA NEHNLENLVK FFSRMKVAQV APNEISYCIL AIAHAVARLY TATEAYVEAV EKSITGNNWS TLDVLLMLYG YLGNQKELER
301: VWATIRELPS VRSKSYMLAI EAFGRIGQLN QAEELWLEME STKGLKSVEQ FNSMMSVYCK HGFIGKAAKL YKNMKASGCK PNAITYRQLA LGCLKSGMAE
401: QGLKTLDLGL RLTISKRVRN SIPWLETTLS IVEIFAEKGD MGNVERLFEE FHKSKYCRYT FVYNTLIKAY VKAKIYDPNL LKRMILGGAR PDAETYSLLK
501: IAEQFRT

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.