CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69049	Soybean	mitochondrion	89.5	88.18
KRH66764	Soybean	cytosol	47.5	68.67
KRG95098	Soybean	mitochondrion	62.0	60.98
VIT_08s0007g05090.t01	Wine grape	mitochondrion	58.17	55.93
GSMUA_Achr5P27560_001	Banana	cytosol	45.17	52.83
PGSC0003DMT400022632	Potato	mitochondrion	54.83	52.72
Solyc12g020050.1.1	Tomato	plastid	54.67	52.56
GSMUA_Achr8P21680_001	Banana	mitochondrion	53.83	52.27
AT1G80270.2	Thale cress	mitochondrion	51.5	51.85
CDY57695	Canola	mitochondrion	51.67	51.41
PGSC0003DMT400021596	Potato	mitochondrion	51.17	50.08
AT1G15480.1	Thale cress	mitochondrion	49.5	50.0
CDY39654	Canola	mitochondrion	49.83	49.75
Os01t0280400-00	Rice	mitochondrion	48.17	47.3
Os12t0170100-01	Rice	mitochondrion	48.0	47.14
TraesCS3D01G195000.1	Wheat	mitochondrion	47.17	46.17
TraesCS3B01G220600.2	Wheat	mitochondrion	47.0	46.0
HORVU3Hr1G040710.1	Barley	mitochondrion	46.83	45.91
AT3G15590.2	Thale cress	cytosol, mitochondrion	46.67	45.9
TraesCS3A01G191200.1	Wheat	mitochondrion	46.67	45.75
Bra027226.1-P	Field mustard	plastid	45.67	45.51
GSMUA_Achr11P...	Banana	mitochondrion	47.0	44.9
Zm00001d008224_P002	Maize	mitochondrion	46.17	44.53
Zm00001d040475_P001	Maize	mitochondrion	45.33	44.37
OQU86720	Sorghum	mitochondrion	44.83	43.88
Bra003559.1-P	Field mustard	cytosol	51.5	43.4
CDY30088	Canola	plastid	44.33	43.11
CDX97686	Canola	plastid	44.33	42.9
Bra026128.1-P	Field mustard	cytosol	49.83	32.12
CDX79395	Canola	cytosol	51.67	30.24
KRH45616	Soybean	nucleus	20.0	24.49
KRH10858	Soybean	mitochondrion	19.67	24.28
KRH10262	Soybean	mitochondrion	20.17	23.87
KRH31780	Soybean	mitochondrion	18.0	22.69
KRH23068	Soybean	mitochondrion	19.0	22.49
KRH26940	Soybean	cytosol	18.5	22.38
KRH69203	Soybean	cytosol	14.5	22.36
KRH22399	Soybean	cytosol	17.33	21.85
KRH55328	Soybean	plastid	17.67	21.54
KRG99413	Soybean	cytosol, mitochondrion	12.33	21.08
KRH48889	Soybean	plastid	19.17	21.06
KRH10583	Soybean	mitochondrion	14.0	21.05
KRH43872	Soybean	mitochondrion	13.83	21.01
KRH52991	Soybean	mitochondrion	17.33	20.97
KRH66454	Soybean	plastid	18.5	20.0
KRH62276	Soybean	mitochondrion	18.17	18.96

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100806780	MapMan:16.12.5.4.19	EMBL:ACUP02006072	EnsemblPlantsGene:GLYMA_10G000600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	UniProt:I1L7B5	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlants:KRH31614	ProteinID:KRH31614	ProteinID:KRH31614.1	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1592	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000233D665	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:84337..88080

Molecular Weight (calculated)

67967.8 Da

IEP (calculated)

8.751

GRAVY (calculated)

-0.420

Length

600 amino acids

Sequence
(BLAST)

001: MWTLRRASFR LSTRRGVNAG ASRASAVKLV ATTSEENEAG IPQSRQITYG RFLSAGMGRV SLKFAVGRHE LSSQAGASST KDDDDDLEIH GSNDESDADL
101: SDGDEDGEKP HDELELSDAE IDPTKKKSQA RWTQLKLFKV ILNAPGLSVD SALSKWAGQG KELSRKEIFL AVRELRRRKM YGRAFQLFQW LESNKKLEFM
201: ESDYASQLDL IAKLRGLPQA EKYIESVPES FRGELLYRTL LANCASQNNL IASEKIFNKM KDLDLPLTVF ACNQLLLLYK KLDKKKIADV LLLMEKENVK
301: PSLFTYRILI DSKGHSNDIA GMEQVFETMK EEGFEPDIQL QALLARHYTS AGLKEKAEAI LKEIEGENLE EKQWVCATLL RLYANLGKAD EVERIWKVCE
401: SKPRVDDCLA AVEAWGKLEK IEEAEAVFEM ASKKWKLNSK NYSILLKIYA NNKMLAKGKD LIKRMADSGL RIGPLTWNAL VKLYIQAGEV EKADSVLQKA
501: IQQSQLQPMF TTYLDILEQY AKRGDVHNSE KIFLKMRQAG YTSRISQFKV LMQAYVNAKV PAYGIRERMK ADNLFPNKTL ANQLFLVDAF RKNPVSDLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.