Factsheet for Solyc12g020050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022632	Potato	mitochondrion	94.71	94.71
KRH66764	Soybean	cytosol	40.87	61.45
VIT_08s0007g05090.t01	Wine grape	mitochondrion	59.13	59.13
KRH69049	Soybean	mitochondrion	55.29	56.65
KRH31614	Soybean	mitochondrion	52.56	54.67
KRG95098	Soybean	mitochondrion	52.08	53.28
GSMUA_Achr5P27560_001	Banana	cytosol	43.75	53.22
CDY57695	Canola	mitochondrion	51.12	52.9
AT1G80270.2	Thale cress	mitochondrion	50.32	52.68
GSMUA_Achr8P21680_001	Banana	mitochondrion	51.44	51.94
CDY39654	Canola	mitochondrion	49.84	51.75
AT1G15480.1	Thale cress	mitochondrion	46.79	49.16
HORVU3Hr1G040710.1	Barley	mitochondrion	47.92	48.86
TraesCS3D01G195000.1	Wheat	mitochondrion	47.44	48.29
TraesCS3B01G220600.2	Wheat	mitochondrion	46.96	47.8
Os01t0280400-00	Rice	mitochondrion	46.63	47.63
TraesCS3A01G191200.1	Wheat	mitochondrion	46.63	47.55
Os12t0170100-01	Rice	mitochondrion	45.99	46.97
Zm00001d040475_P001	Maize	mitochondrion	45.99	46.82
OQU86720	Sorghum	mitochondrion	45.35	46.17
GSMUA_Achr11P...	Banana	mitochondrion	45.99	45.7
Zm00001d008224_P002	Maize	mitochondrion	45.19	45.34
Bra003559.1-P	Field mustard	cytosol	50.64	44.38
AT3G15590.2	Thale cress	cytosol, mitochondrion	42.63	43.61
Bra027226.1-P	Field mustard	plastid	41.67	43.19
CDY30088	Canola	plastid	40.71	41.17
CDX97686	Canola	plastid	40.87	41.13
Bra026128.1-P	Field mustard	cytosol	48.72	32.65
CDX79395	Canola	cytosol	50.64	30.83
Solyc11g006380.1.1	Tomato	cytosol	19.55	24.8
Solyc06g005140.2.1	Tomato	mitochondrion	20.19	24.23
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	18.91	24.03
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	16.83	23.13
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	18.27	23.12
Solyc01g100580.2.1	Tomato	mitochondrion	17.31	22.41
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	17.15	22.06
Solyc07g054100.1.1	Tomato	cytosol	11.22	21.67
Solyc06g071900.2.1	Tomato	mitochondrion	18.27	21.31
Solyc10g047370.1.1	Tomato	mitochondrion	13.62	21.3
Solyc01g089870.2.1	Tomato	nucleus	17.63	20.18
Solyc01g081320.2.1	Tomato	plastid	16.35	19.69
Solyc07g063220.2.1	Tomato	plastid	17.47	19.64

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.5.4.19	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009536	GO:GO:0009941	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4DDM8	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc12g020050.1
EnsemblPlants:Solyc12g020050.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027699C6	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:13965325..13970236

Molecular Weight (calculated)

70293.2 Da

IEP (calculated)

7.973

GRAVY (calculated)

-0.409

Length

624 amino acids

Sequence
(BLAST)

001: MWAVRRASSS FKKQVFITGG SRICYSTLDI TSHCLKGHND GLKGDSNVIS HRALTLGGYQ ITSHGFLRVF KESRSFSSQA GTKSSGEEDS NSDDGFSELE
101: SSSATEAIQE VNKVDESVSE HEISDEDLDG EDVEAPQELL SDTEAEINKR KSPRNGVSSA LFNAVMAAPA LRVSKIMDKW VEGNNVTRVE VASAMLNFRK
201: RRMYGKALQL SEWLESSNQL TFIDRDYASR VDLIAKVLGL KKAEDYIGTI PESFRNEVIY RTLLANCVAE GDLKKSEQIF NKMKDLEFPL TCFSYNQLLL
301: LYKKTDKKKI ADVLLLMEKE NVKPTHFTYR LLIDVKGQFN DISGMEQIVE TMKAEGLEPD LTTKSILVKH YISGGLNEKA ENVLKEMEGG DKKATRWACR
401: SLLPHYAALG RANEVARIWH VCESNPRLEE CVAAIDAWGK LHNIKEAEAI FEKMAAKWPT LSSKHYSVLL NIYANHKMLS KGKDLVKRMA DSGCRIGPVT
501: WDALVRLYIE AGEVEKADSI LHKAGEQNRL RPMIYSYLMI MDQYAKKGDI HNTEKMFHRM RQAGYVSRAT QYQYLIRAYI NAKAPCYGIA DRMKADNIFP
601: NKGLTNMLAQ VDAFKKNAVS DLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.