Factsheet for Solyc06g005140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077284	Potato	mitochondrion	97.12	96.37
VIT_16s0039g02800.t01	Wine grape	cytosol	65.38	68.27
Bra018528.1-P	Field mustard	mitochondrion	56.73	57.39
CDX97288	Canola	mitochondrion	56.54	57.2
AT4G02820.1	Thale cress	mitochondrion	57.88	56.58
CDX91277	Canola	mitochondrion	56.15	56.26
GSMUA_Achr1P17120_001	Banana	mitochondrion	54.04	54.04
Os12t0527900-01	Rice	mitochondrion	49.23	49.81
TraesCS5D01G112000.1	Wheat	mitochondrion	48.65	49.61
HORVU5Hr1G027150.1	Barley	mitochondrion	48.65	49.22
TraesCS5B01G104900.1	Wheat	mitochondrion	48.27	49.22
TraesCS5A01G099700.1	Wheat	mitochondrion	48.27	49.22
Zm00001d023915_P001	Maize	mitochondrion	45.19	46.91
OQU79216	Sorghum	cytosol	46.73	44.26
Solyc10g047370.1.1	Tomato	mitochondrion	24.81	32.33
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	28.27	30.31
Solyc11g006380.1.1	Tomato	cytosol	28.46	30.08
Solyc07g054100.1.1	Tomato	cytosol	18.27	29.41
Solyc01g089870.2.1	Tomato	nucleus	30.38	28.99
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	27.12	28.6
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	26.35	27.9
Solyc01g081320.2.1	Tomato	plastid	27.12	27.22
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	23.46	26.87
Solyc01g100580.2.1	Tomato	mitochondrion	24.62	26.56
Solyc07g063220.2.1	Tomato	plastid	27.5	25.77
CDY36566	Canola	mitochondrion	23.46	20.3
Solyc12g020050.1.1	Tomato	plastid	24.23	20.19
Solyc06g071900.2.1	Tomato	mitochondrion	19.81	19.25
CDY36565	Canola	cytosol	0.96	1.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4C2Z8	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc06g005140.2	EnsemblPlants:Solyc06g005140.2.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002765B1D	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:165496..169137

Molecular Weight (calculated)

59545.3 Da

IEP (calculated)

9.793

GRAVY (calculated)

-0.402

Length

520 amino acids

Sequence
(BLAST)

001: MLLRLIRRSY AAVRPLSTEA STTVKSTGSG GGSGITTSLE GGTSTRGRDT LGRRLLSLIY AKRSAVIAIR KWKEEGHPVR KYELNRIVRE LRRHKRYKHA
101: LEVCEWMRVQ DDIELLSGDY AVHLDLIAKV RGMNSAEKFF EDLPDKLKVQ TTCTALLHTY VQHKDTSKAE SLMEKMSECG FLKYPLPYNH MLTLYISQGQ
201: LEKVPGLIQE LKKNTSPDIV TYNLELAVFA SQNNVEAAEK AFLELKKAKL DPDWITFSTL TNIYIKSSLQ DKAKSTLREM EKRISRKGRT AYASLVSLHT
301: NLQSKDEVFR IWKEMKSLFR KVNDTEYSCI ISSLLKLDEF GEAMNLYTEW EAGSVTKDTR IANLILAAYI NRSEMENAVD FHNRMAQKGI TPSCTTWELL
401: TRGYLKQKEM DKVLEFFKKT VTSVSKWNPD AKMVRKMFHV VEEQGDIQMA EQLLVTLRHA KFVNTEIYNA LLRTYVNAGK MPMIVTERMK KDNVEMDEET
501: RKLIGITSKM TVTEVPNGVA

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.