CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97288	Canola	mitochondrion	94.41	95.33
AT4G02820.1	Thale cress	mitochondrion	84.2	82.14
VIT_16s0039g02800.t01	Wine grape	cytosol	60.89	63.45
PGSC0003DMT400031020	Potato	cytosol	13.68	59.66
Solyc06g005140.2.1	Tomato	mitochondrion	56.26	56.15
PGSC0003DMT400077284	Potato	mitochondrion	56.26	55.73
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	54.53	54.01
GSMUA_Achr1P17120_001	Banana	mitochondrion	52.79	52.69
PGSC0003DMT400092266	Potato	mitochondrion	17.92	50.27
Os12t0527900-01	Rice	mitochondrion	48.94	49.42
TraesCS5A01G099700.1	Wheat	mitochondrion	47.4	48.24
Zm00001d023915_P001	Maize	mitochondrion	46.24	47.9
TraesCS5D01G112000.1	Wheat	mitochondrion	47.01	47.84
TraesCS5B01G104900.1	Wheat	mitochondrion	47.01	47.84
HORVU5Hr1G027150.1	Barley	mitochondrion	47.21	47.67
PGSC0003DMT400031016	Potato	cytosol	26.98	46.05
OQU79216	Sorghum	cytosol	47.59	44.99
CDY44801	Canola	mitochondrion	24.86	31.93
CDY39781	Canola	mitochondrion	28.71	31.17
CDY03299	Canola	mitochondrion	28.32	31.08
CDY24553	Canola	mitochondrion	16.76	30.21
CDX96239	Canola	mitochondrion	28.32	29.94
CDY19721	Canola	mitochondrion	27.36	29.77
CDY46999	Canola	mitochondrion	28.13	29.74
CDX99984	Canola	mitochondrion	27.17	29.5
CDY34141	Canola	mitochondrion	27.94	29.47
CDY35213	Canola	cytosol	2.31	29.27
CDY25035	Canola	mitochondrion, plastid	27.36	28.98
CDY35212	Canola	mitochondrion	15.61	28.83
CDY15126	Canola	cytosol, mitochondrion, plastid	27.94	28.32
CDY15237	Canola	mitochondrion	27.94	28.27
CDY50357	Canola	mitochondrion	10.79	28.0
CDX90079	Canola	mitochondrion	27.55	27.93
CDY05574	Canola	mitochondrion	28.13	27.86
CDY65573	Canola	mitochondrion	19.85	27.84
CDY50358	Canola	cytosol	12.52	27.66
CDX89976	Canola	mitochondrion	27.36	27.57
CDX98698	Canola	mitochondrion	25.82	27.46
CDY00734	Canola	mitochondrion	9.25	27.12
CDY27645	Canola	mitochondrion	13.49	27.03
CDX91822	Canola	mitochondrion	25.82	26.8
CDX90962	Canola	mitochondrion	25.24	26.15
CDY71968	Canola	plastid	14.07	25.0
CDY24554	Canola	cytosol	7.32	24.84
CDY31943	Canola	plastid	20.42	21.86
CDY05786	Canola	plastid	20.23	21.65
CDY57695	Canola	mitochondrion	24.08	20.73
CDY39654	Canola	mitochondrion	23.89	20.63
CDY27647	Canola	mitochondrion	15.99	20.39
CDY36566	Canola	mitochondrion	23.51	20.3
CDY09903	Canola	mitochondrion	20.62	20.19
CDY48421	Canola	mitochondrion	15.99	20.1
CDY06272	Canola	mitochondrion	20.23	19.81
CDX94049	Canola	cytosol	24.66	18.23
CDX97686	Canola	plastid	21.77	18.23
CDY30088	Canola	plastid	21.19	17.83
CDY53325	Canola	mitochondrion	22.93	17.05
CDY53324	Canola	mitochondrion, plastid	22.93	16.28
CDX73880	Canola	mitochondrion	15.03	15.57
CDY66759	Canola	cytosol	19.27	13.39
CDX79395	Canola	cytosol	24.08	12.2
CDY36565	Canola	cytosol	1.35	2.09

Protein Annotations

EnsemblPlants:CDX91277	EnsemblPlantsGene:GSBRNA2T00152515001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF935	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX91277	ProteinID:CDX91277.1
SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	UniParc:UPI0004EEA22C	MapMan:35.1	:

Description

BnaC02g26880D

Coordinates

chrLK031866:-:1012661..1014737

Molecular Weight (calculated)

59302.0 Da

IEP (calculated)

9.093

GRAVY (calculated)

-0.376

Length

519 amino acids

Sequence
(BLAST)

001: MNLSIFLRRT RPTVASLCRL FSAATVETTE TGALVKTGSG GGRRDTLGGR LLRLTYTKRS AVVSIRKWKE EGHTVRKYEL NRIVRELRKI KRYKHALEIC
101: EWMVLQEDIK LQPGDYAVHL DLISKIRGLN SAEKFFQDMP DKMRDHAACT SLLHSYVKNK LSDKAEALFE RMAECGFLKS SCLPYNHMLS MYISEGQFEK
201: VPEMIKELKS KTSPDIVTYN LWMTAFASGN DVEAAEKVYL KVKKEANLSP DWVTYSLLTN LYAKTGNLEK AKLALKEMEK LVSKRYRVAY ASLISLHGNL
301: GDKDGVDSTW KMITSSFKKM NDAEYLSMIS SLLKLGDFEQ AKGLYDEWES VSGTRDARIP NLILAEYMNR EEETHLGDKF YERMVEKGIN PSYSTCEILT
401: WGYLKRKDME KVLDCFGKAI DAVKKWTVNV RLLKAVCKEL EEQGDVKGAE KLMSILQKVG HVNTQLYNSL LRTYAKAGEM ALIVEERMAK DNVEMDEETK
501: ELIRLTSLMR VTEISTTIS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.