Factsheet for Zm00001d023915_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU79216	Sorghum	cytosol	90.82	82.88
Os12t0527900-01	Rice	mitochondrion	83.83	81.71
TraesCS5B01G104900.1	Wheat	mitochondrion	82.44	80.98
TraesCS5D01G112000.1	Wheat	mitochondrion	82.24	80.78
TraesCS5A01G099700.1	Wheat	mitochondrion	82.24	80.78
HORVU5Hr1G027150.1	Barley	mitochondrion	82.44	80.35
GSMUA_Achr1P17120_001	Banana	mitochondrion	58.48	56.35
VIT_16s0039g02800.t01	Wine grape	cytosol	49.3	49.6
CDX91277	Canola	mitochondrion	47.9	46.24
Bra018528.1-P	Field mustard	mitochondrion	47.31	46.11
CDX97288	Canola	mitochondrion	47.11	45.91
PGSC0003DMT400077284	Potato	mitochondrion	47.31	45.23
Solyc06g005140.2.1	Tomato	mitochondrion	46.91	45.19
PGSC0003DMT400092266	Potato	mitochondrion	16.57	44.86
AT4G02820.1	Thale cress	mitochondrion	47.51	44.74
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	46.31	44.27
PGSC0003DMT400031020	Potato	cytosol	9.98	42.02
PGSC0003DMT400031016	Potato	cytosol	23.55	38.82
Zm00001d052030_P001	Maize	plastid	29.74	28.38
Zm00001d002789_P001	Maize	plastid	28.74	28.07
Zm00001d009122_P001	Maize	mitochondrion	28.14	27.38
Zm00001d032543_P001	Maize	mitochondrion	27.74	26.89
Zm00001d003500_P001	Maize	mitochondrion	22.16	26.24
Zm00001d013923_P001	Maize	mitochondrion	25.75	25.8
Zm00001d011182_P001	Maize	endoplasmic reticulum	24.15	24.59
Zm00001d045492_P004	Maize	cytosol	26.95	22.65
Zm00001d024521_P001	Maize	mitochondrion	19.56	19.07
Zm00001d008224_P002	Maize	mitochondrion	23.35	18.81
Zm00001d040475_P001	Maize	mitochondrion	22.95	18.76
CDY36566	Canola	mitochondrion	21.36	17.8
Zm00001d019185_P001	Maize	cytosol	21.36	10.32
CDY36565	Canola	cytosol	1.0	1.49

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100285395	MapMan:35.1	ProteinID:AQK40390.1	UniProt:B6U4G1	EMBL:BT060455
EMBL:EU972126	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182F96D	EnsemblPlantsGene:Zm00001d023915	EnsemblPlants:Zm00001d023915_P001	EnsemblPlants:Zm00001d023915_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr10:-:28083135..28084982

Molecular Weight (calculated)

56955.1 Da

IEP (calculated)

9.012

GRAVY (calculated)

-0.279

Length

501 amino acids

Sequence
(BLAST)

001: MLARRLAAPD GGRLFSAASS ASARGGHAGG DTLGKRLLKL IYPKRSAVVV LQRWADEGRT VQKYQLNRVV RELRKYGRFK HALEICEWMR TQPEMRLLPG
101: DHAVHLDLVA KVRGLASATK FFEDMPERAK GPSTCNALLH AYVQNGAREK AEAMLAEMAR VGYLTCALPF NHMMSLYMAT GELERVPEMI KELRRYTLPD
201: LVTYNIWLTY CSKKDSVKSA EKVFGLMKDD CVVPDWMTFS LLGSIYINAG LHVEGRNALV EMEKRASRKE RAAYSSLLTL YASLSDRGNL DRVWNKMRGT
301: FRKFSDTEYK CMLTSLLRFD DIAAAESIFS EWESTSGTRD SRIPNTILSY YIKNGMIKKA ESFLDHIVEK GVKPSYSTWE AFVWGYLGDK TDKVLECMKK
401: ALSCLEKWEP NHELATAIFS QIEKTGDIEA AEKLLVIFRD AEYVTTEMYN SVLRTYAEAK LMPLIVDERM EQDKVAMDVE TKRLLRLTSK YPIGEVSVSM
501: S

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.