Factsheet for Zm00001d002789_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12592	Sorghum	plastid	95.71	95.34
Os04t0544400-00	Rice	plastid	81.68	82.0
TraesCS2A01G391600.1	Wheat	plastid	76.8	78.33
TraesCS2B01G410100.1	Wheat	plastid	77.19	77.95
TraesCS2D01G389900.1	Wheat	plastid	77.0	77.3
HORVU2Hr1G093220.7	Barley	mitochondrion	77.78	76.14
GSMUA_AchrUn_...	Banana	cytosol	40.35	55.5
VIT_15s0021g01300.t01	Wine grape	plastid	45.03	43.83
AT1G02150.1	Thale cress	mitochondrion	42.3	41.41
Bra033215.1-P	Field mustard	mitochondrion	41.33	41.41
CDX90079	Canola	mitochondrion	41.33	41.41
CDY15126	Canola	cytosol, mitochondrion, plastid	41.13	41.21
KRH48889	Soybean	plastid	42.11	39.56
KRH66454	Soybean	plastid	42.69	39.46
Solyc01g089870.2.1	Tomato	nucleus	41.33	38.9
PGSC0003DMT400080049	Potato	cytosol, plastid	41.13	38.72
Zm00001d009122_P001	Maize	mitochondrion	29.43	29.32
Zm00001d023915_P001	Maize	mitochondrion	28.07	28.74
Zm00001d013923_P001	Maize	mitochondrion	27.1	27.8
Zm00001d003500_P001	Maize	mitochondrion	21.44	26.0
Zm00001d032543_P001	Maize	mitochondrion	25.93	25.73
Zm00001d052030_P001	Maize	plastid	26.32	25.71
Zm00001d045492_P004	Maize	cytosol	28.66	24.66
Zm00001d011182_P001	Maize	endoplasmic reticulum	21.05	21.95
Zm00001d024521_P001	Maize	mitochondrion	20.47	20.43
Zm00001d008224_P002	Maize	mitochondrion	21.64	17.85
Zm00001d040475_P001	Maize	mitochondrion	21.05	17.62
Zm00001d019185_P001	Maize	cytosol	22.22	10.99

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100382076	MapMan:35.1	EMBL:BT063075	UniProt:C0P456	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002885
InterPro:IPR011990	InterPro:IPR019734	ProteinID:ONM15344.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13181
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001948BE9	EnsemblPlantsGene:Zm00001d002789	EnsemblPlants:Zm00001d002789_P001	EnsemblPlants:Zm00001d002789_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein

Coordinates

chr2:-:22698603..22700750

Molecular Weight (calculated)

58146.4 Da

IEP (calculated)

7.369

GRAVY (calculated)

-0.425

Length

513 amino acids

Sequence
(BLAST)

001: MLLHLVTSSP LTPACPSPKR RTCVVAAAVL VTVRCAASSS SSTPSSSASE AAAAGQRVAK VHSYGTVDYE RRSPLRWGTL YRRIAVGHGG RPVGRTLGAW
101: DEGERRLDKW ELCRIAKELR KFRRFNLALQ VYDWMTERRD RFPLSSSDMA IQLDLIAKVR GVPHAEKYFD ELPDAMKDKR TYGSLLNVYA QAMMKEKTEE
201: TFEQMRKKGF ASDTLPCNVL MNFYVDSGEP DEVLAIIDEM KERNVSFDVC TYNIWIKSCA AKQDAEEMEQ VFSQMIADES VVANWTTYTT LASMYLKLGN
301: SEKAEECLKD AEKRTTGREK KCFHYLMTLY SHLGKKEEVY RIWNWYKATF PMIHNLGYQE LLSALIRIGD IEGAELLYEE WASKSYSFDP KTMNILLAWY
401: AKEGLITKAE QTVNRFVEKG GNPKPNTWEI LATAYMNDDK ISEALSCMEK ATAVKSASKW KPRPTNVETL LASFKEKNDA EGADRLVSVL TSRGCAEDEE
501: YKSLIDTYAF AGT

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.