Factsheet for VIT_15s0021g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g089870.2.1	Tomato	nucleus	64.14	62.02
PGSC0003DMT400080049	Potato	cytosol, plastid	63.76	61.65
Bra033215.1-P	Field mustard	mitochondrion	59.58	61.33
CDX90079	Canola	mitochondrion	59.58	61.33
AT1G02150.1	Thale cress	mitochondrion	60.72	61.07
CDY15126	Canola	cytosol, mitochondrion, plastid	59.2	60.94
KRH48889	Soybean	plastid	60.72	58.61
KRH66454	Soybean	plastid	61.1	58.02
GSMUA_AchrUn_...	Banana	cytosol	39.85	56.3
EES12592	Sorghum	plastid	44.59	45.63
Os04t0544400-00	Rice	plastid	44.02	45.4
Zm00001d002789_P001	Maize	plastid	43.83	45.03
TraesCS2D01G389900.1	Wheat	plastid	43.26	44.62
TraesCS2A01G391600.1	Wheat	plastid	42.5	44.53
TraesCS2B01G410100.1	Wheat	plastid	42.69	44.29
HORVU2Hr1G093220.7	Barley	mitochondrion	43.07	43.32
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	32.07	33.87
VIT_00s0394g00020.t01	Wine grape	cytosol	30.93	33.33
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	31.5	32.94
VIT_16s0039g02800.t01	Wine grape	cytosol	31.12	32.93
VIT_10s0597g00040.t01	Wine grape	extracellular	31.12	32.41
VIT_07s0005g01630.t01	Wine grape	mitochondrion	28.46	31.78
VIT_11s0078g00180.t01	Wine grape	cytosol	11.2	30.89
VIT_18s0001g07000.t01	Wine grape	mitochondrion	29.03	30.48
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	28.08	29.54
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	26.76	28.31
VIT_06s0004g04690.t01	Wine grape	mitochondrion	21.06	21.1
VIT_08s0007g05090.t01	Wine grape	mitochondrion	21.44	18.11

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100259772	wikigene:100259772	MapMan:35.1	ProteinID:CCB43902	ProteinID:CCB43902.1
UniProt:F6GVB9	EMBL:FN594952	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100259772	wikigene:LOC100259772	PFAM:PF01535
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGR:TC67177	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C9780	ArrayExpress:VIT_15s0021g01300	EnsemblPlantsGene:VIT_15s0021g01300
EnsemblPlants:VIT_15s0021g01300.t01	unigene:Vvi.10310	RefSeq:XP_002270492	RefSeq:XP_002270492.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:-:11452499..11460652

Molecular Weight (calculated)

60308.4 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.423

Length

527 amino acids

Sequence
(BLAST)

001: MLLQFTISPP LHQQLSGFPS FTLPRSVNYR KHSITCSISQ IHSYGTVDYE RRPLVKWNAV YRRISLMENP EMGSASVLNQ WENEGKRLTK WELCRVVKEL
101: RKFKRFKMAL EVYEWMNNRG ERFRLSSSDA AIQLDLIAKV CGVSSAEDYF SRLPDTLKDK RIYGALLNAY VQAKMRDKAE ILIEKLRNKG YATTPLPFNV
201: MMTLYMNLKE LDKVQSMISE MMNKNIQLDI YSYNIWLSSC ESTERMEQVF EQMKLERTIN PNWTTFSTMA TMYIKLGQFE KAEECLKKVE SRITNRDRMP
301: YHYLISLYGS TGNKAEVYRA WNIYKSKFPN IPNLGYHALI SSLVRVGDLE GAEKIYEEWL SVKSSYDPRI GNLLLGCYVK EGFLEKAEGF LDHMIEAGGK
401: PNSTTWEILA EGNTGVKKIS DALSCFKRAV LAEGSNGWKP KPVNVSAFLD LCEEEADTAT KEALMGLLRQ MGCLEDEPYA SLFGLHTGSV TGNELSNEKD
501: RTGADKDIDE DEDDGAEMLL NQFQSGL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.