Factsheet for VIT_12s0028g03870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054100.1.1	Tomato	cytosol	30.06	46.44
PGSC0003DMT400047256	Potato	extracellular	29.26	45.2
KRH22399	Soybean	cytosol	41.68	43.7
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	43.09	43.61
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	43.49	43.57
KRH26940	Soybean	cytosol	41.88	42.14
CDY39781	Canola	mitochondrion	39.88	41.63
AT2G20710.1	Thale cress	mitochondrion	40.68	41.43
Bra036673.1-P	Field mustard	mitochondrion	39.28	41.0
CDY03299	Canola	mitochondrion	38.48	40.59
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	40.28	40.12
CDY35213	Canola	cytosol	3.01	36.59
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	35.67	35.32
VIT_10s0597g00040.t01	Wine grape	extracellular	35.07	34.59
CDY65573	Canola	mitochondrion	24.25	32.7
Bra011054.1-P	Field mustard	mitochondrion	22.04	32.26
VIT_15s0021g01300.t01	Wine grape	plastid	33.87	32.07
VIT_00s0394g00020.t01	Wine grape	cytosol	30.46	31.08
CDY35212	Canola	mitochondrion	17.43	30.96
VIT_07s0005g01630.t01	Wine grape	mitochondrion	29.26	30.93
VIT_16s0039g02800.t01	Wine grape	cytosol	30.66	30.72
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.66	30.72
CDY71968	Canola	plastid	17.43	29.79
AT1G43010.1	Thale cress	mitochondrion	15.23	29.57
AT1G28020.1	Thale cress	cytosol, plastid	28.86	29.15
VIT_11s0078g00180.t01	Wine grape	cytosol	11.02	28.8
VIT_18s0001g07000.t01	Wine grape	mitochondrion	28.86	28.69
CDY00734	Canola	mitochondrion	10.02	28.25
CDY27645	Canola	mitochondrion	14.43	27.8
CDY05786	Canola	plastid	25.85	26.6
CDY31943	Canola	plastid	25.65	26.39
Bra036496.1-P	Field mustard	plastid	25.45	26.19
AT1G28000.1	Thale cress	mitochondrion	19.84	25.52
CDY27647	Canola	mitochondrion	19.44	23.83
Bra032863.1-P	Field mustard	mitochondrion	19.04	23.75
AT2G20720.1	Thale cress	cytosol	14.23	23.75
AT3G11380.1	Thale cress	mitochondrion	25.65	23.66
Bra032862.1-P	Field mustard	mitochondrion	17.84	23.48
AT3G11350.1	Thale cress	mitochondrion	16.43	22.84
CDY48421	Canola	mitochondrion	18.64	22.52
VIT_06s0004g04690.t01	Wine grape	mitochondrion	21.84	20.72
Bra001400.1-P	Field mustard	mitochondrion, plastid	29.46	19.63
CDY53325	Canola	mitochondrion	27.25	19.48
Bra032865.1-P	Field mustard	cytosol	22.04	19.16
CDY53324	Canola	mitochondrion, plastid	28.06	19.15
VIT_08s0007g05090.t01	Wine grape	mitochondrion	23.65	18.91
CDX73880	Canola	mitochondrion	16.83	16.77
CDY66759	Canola	cytosol	22.65	15.13
Bra032866.1-P	Field mustard	mitochondrion	16.03	12.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100250499	wikigene:100250499	MapMan:35.1	EMBL:AM427751	ProteinID:CAN73453
ProteinID:CAN73453.1	ProteinID:CCB47273	ProteinID:CCB47273.1	UniProt:F6H5B1	EMBL:FN595235	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100250499	wikigene:LOC100250499	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C9E51	ArrayExpress:VIT_12s0028g03870	EnsemblPlantsGene:VIT_12s0028g03870	EnsemblPlants:VIT_12s0028g03870.t01	RefSeq:XP_002273904
RefSeq:XP_002273904.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:4731840..4734188

Molecular Weight (calculated)

57217.6 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.374

Length

499 amino acids

Sequence
(BLAST)

001: MQIIRRFAVD TSSISRVFRV LPYSTETLTS NAPKESLQSR ISPAIDLRVS IVPALEQWRK EGRSIKQQDL HRLIRKLRTF KRYNHALEIY EWIRDKFYFD
101: ISPGDVAIQL DLISKVHGLE QAEKYFNETP NSLRSFQVYG ALLNCYSQKK SLEKAEAIMQ EMRDMGFVKT LSYNVMLGLY SRLGKHEKLD NLMQEMEENG
201: IGLDSFTYCI RLNAYCATSD MEGMEKLLMK LETDPAVNSD WNAYIVAANG YLKADLKEKA VEMLKKSEQF ISGRSRRFGY EILLTLYATM GNKTEVYRIW
301: NLYKTIGKFF NTGYVAMVSS LLKLDDMDGA EKTFEEWLSG NKFFDFRVPN LLIRAYCKKG LLEKAEQLVS RAIEQGEEPI AVTWDALAAG YHENNQMEKA
401: VDTLKKALLA TSQGWKPNPV TLSACLEYLK GKGDVEEAEN LIRLLREQSL VSAYDSDRLV NYIRSEEPGS STIAQMLWDH EDLDAETDGV VDLKQESIS

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.