CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71968	Canola	plastid	44.07	26.71
CDY35212	Canola	mitochondrion	38.98	24.56
CDY27645	Canola	mitochondrion	32.2	22.01
CDY65573	Canola	mitochondrion	40.11	19.19
CDY53325	Canola	mitochondrion	71.75	18.19
AT3G11380.1	Thale cress	mitochondrion	54.24	17.74
CDY50357	Canola	mitochondrion	17.51	15.5
CDX73880	Canola	mitochondrion	43.5	15.37
CDY48421	Canola	mitochondrion	33.9	14.53
CDY27647	Canola	mitochondrion	32.77	14.25
CDY66759	Canola	cytosol	56.5	13.39
CDY53324	Canola	mitochondrion, plastid	54.24	13.13
CDY39781	Canola	mitochondrion	32.77	12.13
CDY03299	Canola	mitochondrion	32.2	12.05
CDY24553	Canola	mitochondrion	18.64	11.46
CDY44801	Canola	mitochondrion	25.99	11.39
CDY31943	Canola	plastid	27.68	10.1
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	28.25	10.02
CDY05786	Canola	plastid	27.12	9.9
CDX98698	Canola	mitochondrion	26.55	9.63
Os10t0501000-01	Rice	cytosol	24.29	9.53
CDX91277	Canola	mitochondrion	27.12	9.25
CDY15126	Canola	cytosol, mitochondrion, plastid	26.55	9.18
CDX97288	Canola	mitochondrion	26.55	9.14
Zm00001d032543_P001	Maize	mitochondrion	26.55	9.09
OQU91552	Sorghum	mitochondrion	25.99	9.02
CDX90079	Canola	mitochondrion	25.99	8.98
TraesCS1B01G188200.1	Wheat	mitochondrion	24.29	8.74
TraesCS1D01G166700.1	Wheat	mitochondrion	24.29	8.69
Os10t0501300-01	Rice	mitochondrion	24.86	8.58
CDY39654	Canola	mitochondrion	28.25	8.32
GSMUA_Achr5P20750_001	Banana	mitochondrion	24.86	8.06
CDY36566	Canola	mitochondrion	27.12	7.99
KRH26940	Soybean	cytosol	22.03	7.86
TraesCS1A01G168700.1	Wheat	mitochondrion	24.86	7.53
CDY30088	Canola	plastid	25.99	7.46
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	20.9	7.43
CDX97686	Canola	plastid	25.99	7.42
KRH22399	Soybean	cytosol	19.77	7.35
CDX99984	Canola	mitochondrion	19.77	7.32
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	20.34	7.3
Os10t0501200-00	Rice	mitochondrion	24.86	7.03
CDY25035	Canola	mitochondrion, plastid	19.21	6.94
CDX96239	Canola	mitochondrion	19.21	6.92
CDY19721	Canola	mitochondrion	18.64	6.92
CDX91822	Canola	mitochondrion	19.21	6.8
CDY57695	Canola	mitochondrion	23.16	6.8
CDX90962	Canola	mitochondrion	19.21	6.79
CDY46999	Canola	mitochondrion	18.64	6.72
CDY34141	Canola	mitochondrion	18.64	6.71
CDY05574	Canola	mitochondrion	19.77	6.68
CDX94049	Canola	cytosol	25.42	6.41
CDX89976	Canola	mitochondrion	18.08	6.21
CDY15237	Canola	mitochondrion	17.51	6.04
CDY06272	Canola	mitochondrion	18.08	6.04
CDY09903	Canola	mitochondrion	18.08	6.04
CDX79395	Canola	cytosol	23.73	4.1
Solyc07g054100.1.1	Tomato	cytosol	2.26	1.24
PGSC0003DMT400047256	Potato	extracellular	1.69	0.93
CDY36565	Canola	cytosol	1.13	0.6
CDY50358	Canola	cytosol	0.0	0.0
CDY35213	Canola	cytosol	0.0	0.0
CDY24554	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY00734	EnsemblPlantsGene:GSBRNA2T00110590001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY00734	ProteinID:CDY00734.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EF44B8
MapMan:35.1	:	:	:	:	:

Description

BnaC03g37180D

Coordinates

chrLK031921:+:556313..557717

Molecular Weight (calculated)

20493.7 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.535

Length

177 amino acids

Sequence
(BLAST)

001: MLLEFFRCFS SATRKAFAHS SKARLFCSNT NPTLSTRSQT LQTRIDSDLH QNSKISTVLE QWRQQGNKLN PSLVKGIFEK LRDSKQYPQA LEVSTWMAEG
101: NVCSLLPEDY TARFHLIENV LGFKEAEKFL EKVPENLRNE HMYTTLLKSY AKKKYLNRAE AVFNKMRELG LLLKPSP

Best Arabidopsis Sequence Match ( AT1G28020.1 )
(BLAST)

001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.