CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020588.1-P	Field mustard	mitochondrion	87.98	93.89
CDY25035	Canola	mitochondrion, plastid	83.59	89.39
CDY19721	Canola	mitochondrion	72.9	80.08
CDX99984	Canola	mitochondrion	72.33	79.29
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	71.37	76.17
VIT_18s0001g07000.t01	Wine grape	mitochondrion	50.0	52.19
KRH52991	Soybean	mitochondrion	48.66	51.41
PGSC0003DMT400004477	Potato	plastid	42.56	46.36
KRH62276	Soybean	mitochondrion	48.47	44.17
Solyc01g081320.2.1	Tomato	plastid	43.13	43.63
TraesCS6B01G391300.1	Wheat	mitochondrion	42.56	43.22
TraesCS6D01G341400.1	Wheat	mitochondrion	42.37	42.69
TraesCS6A01G358600.1	Wheat	mitochondrion	41.98	42.55
HORVU6Hr1G085430.2	Barley	mitochondrion	42.18	41.78
GSMUA_Achr7P12830_001	Banana	mitochondrion	42.75	41.18
Os02t0796400-00	Rice	mitochondrion	40.46	41.01
EES07683	Sorghum	mitochondrion	40.27	40.04
Zm00001d052030_P001	Maize	plastid	39.31	39.24
Zm00001d011182_P001	Maize	endoplasmic reticulum	28.05	29.88
CDY35213	Canola	cytosol	2.29	29.27
CDX97288	Canola	mitochondrion	27.67	28.21
CDX91277	Canola	mitochondrion	27.86	28.13
CDY15126	Canola	cytosol, mitochondrion, plastid	26.91	27.54
CDX90079	Canola	mitochondrion	26.91	27.54
CDY24553	Canola	mitochondrion	15.08	27.43
CDX96239	Canola	mitochondrion	25.57	27.29
CDX98698	Canola	mitochondrion	25.38	27.25
CDY50358	Canola	cytosol	12.21	27.23
CDY15237	Canola	mitochondrion	26.53	27.1
CDY46999	Canola	mitochondrion	25.38	27.09
CDX89976	Canola	mitochondrion	26.53	26.99
CDY03299	Canola	mitochondrion	23.86	26.43
CDY34141	Canola	mitochondrion	24.81	26.42
CDY39781	Canola	mitochondrion	23.86	26.15
CDX91822	Canola	mitochondrion	24.81	26.0
CDX90962	Canola	mitochondrion	24.62	25.75
CDY65573	Canola	mitochondrion	18.13	25.68
CDY44801	Canola	mitochondrion	19.47	25.25
CDY35212	Canola	mitochondrion	12.98	24.2
CDY50357	Canola	mitochondrion	8.59	22.5
CDY27645	Canola	mitochondrion	10.88	22.01
CDY24554	Canola	cytosol	6.3	21.57
CDY71968	Canola	plastid	11.83	21.23
CDY05786	Canola	plastid	18.7	20.21
CDY06272	Canola	mitochondrion	20.42	20.19
CDY31943	Canola	plastid	18.51	20.0
CDY09903	Canola	mitochondrion	20.04	19.81
CDY00734	Canola	mitochondrion	6.68	19.77
CDY39654	Canola	mitochondrion	22.33	19.47
CDY36566	Canola	mitochondrion	22.14	19.3
CDY57695	Canola	mitochondrion	21.95	19.07
CDX94049	Canola	cytosol	25.0	18.66
CDY27647	Canola	mitochondrion	13.74	17.69
CDX97686	Canola	plastid	20.42	17.26
CDY48421	Canola	mitochondrion	13.36	16.95
CDY30088	Canola	plastid	19.85	16.86
CDY53324	Canola	mitochondrion, plastid	19.08	13.68
CDY53325	Canola	mitochondrion	18.13	13.61
CDX73880	Canola	mitochondrion	12.4	12.97
CDY66759	Canola	cytosol	16.98	11.91
CDX79395	Canola	cytosol	21.76	11.12
CDY36565	Canola	cytosol	1.34	2.09

Protein Annotations

EnsemblPlants:CDY05574	EnsemblPlantsGene:GSBRNA2T00120521001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF578	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY05574	ProteinID:CDY05574.1	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0004EF0EE6	MapMan:35.1	:	:	:

Description

BnaA02g31170D

Coordinates

chrLK031962:+:952592..954435

Molecular Weight (calculated)

60600.2 Da

IEP (calculated)

9.470

GRAVY (calculated)

-0.178

Length

524 amino acids

Sequence
(BLAST)

001: MFTRFRLITN KTFSTTTVLR LVSSRASTDT SSISHRNHLK EILRKNGPRL SVPSLLQQRL DSGHAVTLPE LRSITNRLIK SNRHDLALQM MEWMETQKDV
101: HFSADDTCLR LELIIKSHGL KQAEEYFEKK ASKASYLPLL RAYVRDKLVL EAESLMEKLN GLGFLVTPHP FNEMMKLYEA THQYEKVVLV VSLMKRNKIP
201: RNVLSYNLWM NACCEVSGVE SVYKEMVDDK SVEVGWSSLC ALANVYVKAG FVEKASLVLE SAEKKLNRSN RLGYFFLITL HASLGNKEGV VKLWERSKSV
301: SGRATCANYI CVLSSLVKLG DLAEAERVFS EWERTCFNYD VRVSNVLLGA YMRGGDIRRA EALHHRVLER GGAPNYKTWE ILMEGFVKCQ SMEKAIDAMH
401: RAFELMKDCH WRPSQKIVMA IAEYFEKEEK MDEANRYVRD LHRLGLASLP LYRLLLRMHE HVQRPASDIY EMMKLDKIIM DREIHTSFNI VQLLNMSIIR
501: HGIFMCKLFN FLKILFSFLN SPIY

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.