CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06272	Canola	mitochondrion	97.36	97.36
AT1G07590.1	Thale cress	mitochondrion	87.36	86.7
PGSC0003DMT400069375	Potato	cytosol	57.92	64.77
KRH10262	Soybean	mitochondrion	61.7	64.5
KRH23068	Soybean	mitochondrion	60.94	63.71
VIT_06s0004g04690.t01	Wine grape	mitochondrion	63.21	63.69
Solyc06g071900.2.1	Tomato	mitochondrion	60.0	59.44
Zm00001d024521_P001	Maize	mitochondrion	53.02	54.67
GSMUA_Achr9P23230_001	Banana	mitochondrion	53.4	54.21
TraesCS7D01G293300.1	Wheat	mitochondrion	51.7	53.41
TraesCS7A01G296400.1	Wheat	mitochondrion	51.32	53.02
TraesCS7B01G189100.1	Wheat	mitochondrion	51.13	52.83
HORVU7Hr1G066420.6	Barley	plastid	47.92	48.29
OQU79953	Sorghum	cytosol	52.64	44.64
CDY24553	Canola	mitochondrion	14.53	26.74
CDX96239	Canola	mitochondrion	22.08	23.83
CDY34141	Canola	mitochondrion	22.08	23.78
CDY46999	Canola	mitochondrion	21.89	23.63
CDY50357	Canola	mitochondrion	8.68	23.0
CDY50358	Canola	cytosol	10.0	22.55
CDY24554	Canola	cytosol	6.42	22.22
CDY35213	Canola	cytosol	1.7	21.95
CDY19721	Canola	mitochondrion	19.62	21.8
CDY03299	Canola	mitochondrion	19.43	21.78
CDX91822	Canola	mitochondrion	20.38	21.6
CDX90962	Canola	mitochondrion	20.38	21.56
CDY39781	Canola	mitochondrion	19.43	21.55
CDX99984	Canola	mitochondrion	19.06	21.13
CDX90079	Canola	mitochondrion	20.19	20.9
CDX97288	Canola	mitochondrion	20.19	20.82
CDY25035	Canola	mitochondrion, plastid	19.25	20.82
CDY15126	Canola	cytosol, mitochondrion, plastid	20.0	20.7
CDX91277	Canola	mitochondrion	20.19	20.62
CDX89976	Canola	mitochondrion	19.81	20.39
CDY15237	Canola	mitochondrion	19.43	20.08
CDY05574	Canola	mitochondrion	19.81	20.04
CDY57695	Canola	mitochondrion	22.64	19.9
CDX98698	Canola	mitochondrion	18.3	19.88
CDY44801	Canola	mitochondrion	15.09	19.8
CDY65573	Canola	mitochondrion	13.58	19.46
CDY39654	Canola	mitochondrion	21.32	18.8
CDY36566	Canola	mitochondrion	21.32	18.8
CDY35212	Canola	mitochondrion	9.81	18.51
CDY30088	Canola	plastid	21.32	18.31
CDY00734	Canola	mitochondrion	6.04	18.08
CDX97686	Canola	plastid	21.13	18.06
CDY27645	Canola	mitochondrion	8.68	17.76
CDY71968	Canola	plastid	8.68	15.75
CDY05786	Canola	plastid	14.15	15.46
CDY31943	Canola	plastid	14.15	15.46
CDY27647	Canola	mitochondrion	11.32	14.74
CDY48421	Canola	mitochondrion	10.94	14.04
CDX94049	Canola	cytosol	18.11	13.68
CDY53325	Canola	mitochondrion	17.17	13.04
CDY53324	Canola	mitochondrion, plastid	16.79	12.18
CDX79395	Canola	cytosol	22.64	11.71
CDX73880	Canola	mitochondrion	10.19	10.78
CDY66759	Canola	cytosol	15.09	10.71
CDY36565	Canola	cytosol	0.75	1.19

Protein Annotations

EnsemblPlants:CDY09903	EnsemblPlantsGene:GSBRNA2T00031665001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF588
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY09903	ProteinID:CDY09903.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EBD48C	UniProt:A0A078FCX3	MapMan:35.1	:	:

Description

BnaC08g45480DBnaC08g45480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCX3]

Coordinates

chrLK032000:+:9550..11707

Molecular Weight (calculated)

60231.0 Da

IEP (calculated)

9.629

GRAVY (calculated)

-0.336

Length

530 amino acids

Sequence
(BLAST)

001: MRSIIALVRQ RDYFVQAMRR TPGVSYSPAL DHQPNFKASN FLTTLTCSTK SSDSDGDEEP NKSLSRRIEK LPKGVTVGSA LQSWMGDGFP VHGGDVYHAI
101: NRLRKLGRNK RALELMEWII RERPYRPGEL EYSYLLEFTV KIHGISQGET LFTRVPQEFQ NELLYNNLVI ACLDQGVMRL ALGYMKKMRE LGHRTSHLVY
201: NRLIIRNSAP GRRKLIAKDL ALMKADKAVP HVSTYHILMK LEANEHNVDG VLKAFEGMKK AGVEPNEVSY CILAMAHAVA RLYTVAEAYT EEIERTITGD
301: NWSTLDVLMI LYGRLGKEKE VERAWNVVKG FHHVRSKSYL LATEAFGRVG NLERAEEVWL EMKSVRGVKE TEQFNSLMSV YCKRGLIEKA ISVFREMTGD
401: GCKPNSITYR HLALGCAKAN LMKEALKNIE MGSSVKTSKS VRSSTPWLET TLAIVECFAE RGDVENSEKL FEELSSAKYN RYAFVYNALF KAYVKGRVYD
501: PNLFKRMVLG GARPDAESYS LLKLVEQYKP

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.