CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50357	Canola	mitochondrion	65.97	95.0
Bra031484.1-P	Field mustard	mitochondrion	98.96	57.93
CDY34141	Canola	mitochondrion	98.26	57.52
CDY46999	Canola	mitochondrion	96.88	56.82
CDX96239	Canola	mitochondrion	96.18	56.42
AT1G60770.1	Thale cress	cytosol	88.89	52.14
VIT_00s0394g00020.t01	Wine grape	cytosol	70.49	41.51
PGSC0003DMT400002590	Potato	cytosol	69.44	40.65
Solyc11g006380.1.1	Tomato	cytosol	68.75	40.24
KRH45616	Soybean	nucleus	67.71	39.8
GSMUA_Achr1P16170_001	Banana	cytosol	64.24	37.99
Os04t0320200-01	Rice	mitochondrion	65.62	36.07
TraesCS4A01G428500.1	Wheat	mitochondrion	65.62	35.06
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.93	34.82
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.93	34.82
EER87766	Sorghum	cytosol	64.24	34.51
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	64.93	33.94
Zm00001d045492_P004	Maize	cytosol	64.24	31.04
KRG99413	Soybean	cytosol, mitochondrion	37.5	30.77
CDY35212	Canola	mitochondrion	22.22	22.78
CDY44801	Canola	mitochondrion	31.6	22.52
CDX91822	Canola	mitochondrion	37.15	21.4
CDY27645	Canola	mitochondrion	19.1	21.24
CDX90962	Canola	mitochondrion	36.81	21.16
CDY65573	Canola	mitochondrion	26.74	20.81
CDX89976	Canola	mitochondrion	36.81	20.58
CDY15237	Canola	mitochondrion	36.46	20.47
CDX98698	Canola	mitochondrion	31.6	18.65
CDY00734	Canola	mitochondrion	11.46	18.64
CDY15126	Canola	cytosol, mitochondrion, plastid	32.29	18.16
CDX90079	Canola	mitochondrion	31.94	17.97
CDY03299	Canola	mitochondrion	28.82	17.55
CDY48421	Canola	mitochondrion	25.0	17.43
CDY39781	Canola	mitochondrion	28.82	17.36
CDX99984	Canola	mitochondrion	28.47	17.15
CDY27647	Canola	mitochondrion	23.96	16.95
CDY19721	Canola	mitochondrion	27.78	16.77
CDX91277	Canola	mitochondrion	30.21	16.76
CDX97288	Canola	mitochondrion	29.51	16.54
CDY36566	Canola	mitochondrion	32.29	15.47
CDY39654	Canola	mitochondrion	32.29	15.47
CDY25035	Canola	mitochondrion, plastid	26.04	15.31
CDY05574	Canola	mitochondrion	27.43	15.08
CDY71968	Canola	plastid	15.28	15.07
CDY09903	Canola	mitochondrion	26.74	14.53
CDY06272	Canola	mitochondrion	26.74	14.53
CDY57695	Canola	mitochondrion	28.12	13.43
CDX94049	Canola	cytosol	31.6	12.96
CDX97686	Canola	plastid	26.74	12.42
CDY30088	Canola	plastid	26.39	12.32
CDY05786	Canola	plastid	20.49	12.16
CDY31943	Canola	plastid	20.49	12.16
CDY50358	Canola	cytosol	9.72	11.91
CDY53325	Canola	mitochondrion	25.0	10.32
CDX73880	Canola	mitochondrion	16.67	9.58
CDY53324	Canola	mitochondrion, plastid	24.31	9.58
CDX79395	Canola	cytosol	27.78	7.8
CDY66759	Canola	cytosol	19.44	7.5
CDY36565	Canola	cytosol	1.74	1.49
CDY35213	Canola	cytosol	0.0	0.0
CDY24554	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY24553	EnsemblPlantsGene:GSBRNA2T00026874001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY24553	ProteinID:CDY24553.1
TIGRFAMs:TIGR00756	UniParc:UPI0004EE4B2D	UniProt:A0A078GIZ7	MapMan:35.1	:	:

Description

BnaA01g22570DBnaA01g22570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIZ7]

Coordinates

chrLK032160:+:601863..602911

Molecular Weight (calculated)

33181.1 Da

IEP (calculated)

9.491

GRAVY (calculated)

-0.486

Length

288 amino acids

Sequence
(BLAST)

001: MALRHLSRPR DIVKRSTKKY LDEPLYHRLF KDGGSEVSVR QQLNQFLKGT KHVFKWEVGD TIKKLRSRGL YYPALKLSEV MEHRGMNKTV SDQAIHLDLV
101: AKARGIAAGE TYFVNLPETS KTELTYASLL NCYCKELMTE KAEGLLNKMK ELNITVSSMS YNSLMTLYTK TGHAERVPGM VQEMKAENVM PDSYTYNVWM
201: RALAATDDVS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DARLSEKAEK ALQELEVKNT DRDFKAYQFL ITLYGRLGKL SEVYRIWR

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.