CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90962	Canola	mitochondrion	94.8	94.61
Bra000902.1-P	Field mustard	mitochondrion	94.2	94.01
AT4G01990.1	Thale cress	mitochondrion	76.8	76.49
CDY15237	Canola	mitochondrion	60.4	58.87
CDX89976	Canola	mitochondrion	60.4	58.64
VIT_07s0005g01630.t01	Wine grape	mitochondrion	42.6	45.13
PGSC0003DMT400023279	Potato	mitochondrion	44.6	45.05
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	42.2	43.51
KRH69203	Soybean	cytosol	33.0	42.42
KRH31780	Soybean	mitochondrion	40.0	42.02
GSMUA_Achr11P...	Banana	mitochondrion	39.8	38.34
CDY24553	Canola	mitochondrion	21.4	37.15
CDY34141	Canola	mitochondrion	35.8	36.38
CDX96239	Canola	mitochondrion	35.4	36.05
Zm00001d009122_P001	Maize	mitochondrion	37.0	35.92
CDY46999	Canola	mitochondrion	35.0	35.64
Os01t0301000-01	Rice	mitochondrion	37.2	35.63
EES02848	Sorghum	mitochondrion	36.8	34.72
TraesCS2A01G552700.1	Wheat	mitochondrion	38.0	34.48
TraesCS2D01G553300.1	Wheat	mitochondrion	38.2	34.11
CDY50358	Canola	cytosol	16.0	34.04
CDY50357	Canola	mitochondrion	13.6	34.0
TraesCS2B01G584000.2	Wheat	mitochondrion	37.6	34.0
TraesCS6B01G118900.1	Wheat	cytosol	28.2	33.89
TraesCS6D01G079300.1	Wheat	mitochondrion	34.4	33.79
TraesCS6A01G091100.1	Wheat	mitochondrion	34.0	33.53
TraesCS6A01G091000.1	Wheat	mitochondrion	34.2	33.53
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	33.4	33.33
TraesCS2B01G583500.1	Wheat	mitochondrion	32.0	33.33
TraesCS6B01G119100.1	Wheat	mitochondrion	32.6	32.93
TraesCS6D01G079200.1	Wheat	plastid	35.0	32.35
TraesCS6D01G079100.1	Wheat	mitochondrion	30.6	31.94
Os01t0301700-01	Rice	mitochondrion	31.8	31.55
TraesCS6B01G119000.1	Wheat	mitochondrion	30.2	31.52
TraesCS6A01G090800.2	Wheat	mitochondrion	30.2	31.33
TraesCS6A01G090900.1	Wheat	mitochondrion	30.0	31.32
Os01t0301500-01	Rice	cytosol, mitochondrion	29.8	30.79
TraesCS2A01G552100.1	Wheat	mitochondrion	33.8	30.73
TraesCS6A01G091200.2	Wheat	cytosol	22.4	30.68
TraesCS2D01G553100.1	Wheat	mitochondrion	32.8	30.09
CDY24554	Canola	cytosol	9.2	30.07
HORVU6Hr1G016390.10	Barley	plastid	33.4	30.04
HORVU6Hr1G016360.7	Barley	mitochondrion	30.0	30.0
CDX98698	Canola	mitochondrion	28.2	28.89
CDX90079	Canola	mitochondrion	29.0	28.32
CDY15126	Canola	cytosol, mitochondrion, plastid	28.8	28.12
TraesCS6D01G079400.1	Wheat	plastid	25.2	27.94
CDX99984	Canola	mitochondrion	25.6	26.78
CDY25035	Canola	mitochondrion, plastid	26.0	26.53
CDX97288	Canola	mitochondrion	27.2	26.46
CDY19721	Canola	mitochondrion	25.0	26.21
CDX91277	Canola	mitochondrion	26.8	25.82
CDY05574	Canola	mitochondrion	26.0	24.81
CDY03299	Canola	mitochondrion	23.2	24.52
CDY35213	Canola	cytosol	2.0	24.39
CDY39781	Canola	mitochondrion	23.0	24.06
CDY65573	Canola	mitochondrion	17.8	24.05
CDY44801	Canola	mitochondrion	19.2	23.76
CDY35212	Canola	mitochondrion	12.4	22.06
CDY05786	Canola	plastid	20.4	21.03
CDY71968	Canola	plastid	12.2	20.89
CDY31943	Canola	plastid	20.0	20.62
CDY09903	Canola	mitochondrion	21.6	20.38
CDX94049	Canola	cytosol	28.4	20.23
CDY57695	Canola	mitochondrion	24.0	19.9
CDY06272	Canola	mitochondrion	21.0	19.81
CDY27645	Canola	mitochondrion	10.2	19.69
CDY36566	Canola	mitochondrion	23.2	19.3
CDY00734	Canola	mitochondrion	6.8	19.21
CDY39654	Canola	mitochondrion	22.8	18.97
CDX97686	Canola	plastid	21.6	17.42
CDY48421	Canola	mitochondrion	14.0	16.95
CDY30088	Canola	plastid	20.8	16.86
CDY27647	Canola	mitochondrion	13.0	15.97
CDY53325	Canola	mitochondrion	21.0	15.04
CDY53324	Canola	mitochondrion, plastid	20.8	14.23
CDX73880	Canola	mitochondrion	13.2	13.17
CDY66759	Canola	cytosol	17.4	11.65
CDX79395	Canola	cytosol	23.8	11.61
CDY36565	Canola	cytosol	0.8	1.19

Protein Annotations

EnsemblPlants:CDX91822	EnsemblPlantsGene:GSBRNA2T00153422001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX91822	ProteinID:CDX91822.1
SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EF495E	MapMan:35.1	:

Description

BnaC03g31240D

Coordinates

chrLK031870:+:104059..106415

Molecular Weight (calculated)

56528.0 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.345

Length

500 amino acids

Sequence
(BLAST)

001: MAMYSASRLA RRFCATLASA PAAIVGEAAA AVSTRKAAKK HRSVYKKLSN LGSRGGKMEE TLNKLTMEGI PIIKHDLVRY AKDLRKNRLP QRALEVFEWM
101: EKKEIAFTGS DHAIRLDLIA KTKGLEAAES YFNTLDPSSK NRSSYGSLLN CYCVERNEDK AKSHFNEMVD LNLVTNSLPF NNLMAMYLRL GQYDKVPSLV
201: LEMKEKNIPP CAITYSMWIQ SCGSLNDLDG VEKVVEEMKD DSSWDTFANL ASIYAKAGLY SKAEAALKSL EEKMNPHKRD SYHFLISLYA GISNPSEVYR
301: VWELLKKAHP NVNNSSSLAM IQALSRLNDF DGIKKVFKEW ESTCWTYDMR VANVMISSYL KENMYEEAEA VFDGAVKKCK GQLSKARQLL MMYLLKNDQA
401: DLALKHLEAA VLDQDKNWSW SSELICSFFL HFEKSKDVDG AEELCKTLAK WSPLGSESYT LLLKTYVAAE RACNGMQKRL EEEGIEIDDE MEGLLSKICT

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.