Factsheet for TraesCS6A01G090800.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118900.1	Wheat	cytosol	83.61	96.88
TraesCS6A01G090900.1	Wheat	mitochondrion	83.82	84.34
HORVU6Hr1G016360.7	Barley	mitochondrion	87.34	84.2
TraesCS6A01G091100.1	Wheat	mitochondrion	75.52	71.79
TraesCS6A01G091000.1	Wheat	mitochondrion	74.48	70.39
TraesCS6A01G091200.2	Wheat	cytosol	50.62	66.85
TraesCS2A01G552100.1	Wheat	mitochondrion	56.43	49.45
VIT_07s0005g01630.t01	Wine grape	mitochondrion	34.85	35.59
PGSC0003DMT400023279	Potato	mitochondrion	35.06	34.14
TraesCS2A01G552700.1	Wheat	mitochondrion	37.14	32.49
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	33.2	32.13
KRH69203	Soybean	cytosol	25.31	31.36
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	31.54	31.34
AT4G01990.1	Thale cress	mitochondrion	32.16	30.88
Bra000902.1-P	Field mustard	mitochondrion	31.95	30.74
CDX90962	Canola	mitochondrion	31.95	30.74
CDX91822	Canola	mitochondrion	31.33	30.2
KRH31780	Soybean	mitochondrion	29.67	30.04
Bra033321.1-P	Field mustard	mitochondrion	31.95	29.9
CDY15237	Canola	mitochondrion	31.74	29.82
CDX89976	Canola	mitochondrion	31.54	29.51
Solyc01g100580.2.1	Tomato	mitochondrion	28.63	28.63
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.74	28.49
TraesCS4A01G428500.1	Wheat	mitochondrion	31.54	28.2
PGSC0003DMT400007271	Potato	mitochondrion	28.22	28.16
TraesCS1A01G168800.1	Wheat	mitochondrion	29.67	27.98
AT1G02370.1	Thale cress	mitochondrion	30.91	27.75
TraesCS2A01G391600.1	Wheat	plastid	26.76	25.65
TraesCS2A01G318100.1	Wheat	mitochondrion	21.16	24.34
TraesCS5A01G099700.1	Wheat	mitochondrion	25.52	24.12
TraesCS6A01G358600.1	Wheat	mitochondrion	22.82	21.28
TraesCS1A01G168700.1	Wheat	mitochondrion	25.1	20.72
TraesCS3A01G191200.1	Wheat	mitochondrion	21.99	17.32
TraesCS7A01G296400.1	Wheat	mitochondrion	17.84	16.76

Protein Annotations

EnsemblPlants:TraesCS6A01G090800.2	EnsemblPlantsGene:TraesCS6A01G090800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:59342809..59346248

Molecular Weight (calculated)

55408.1 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.313

Length

482 amino acids

Sequence
(BLAST)

001: MLRRAVAAEA RRRISLAPAR LAHELAQPQA ESVVPERRGL EPSWVPLYKR ISKVSHGRPP GIVAAEMDEW LRQRLRLSQD QVLAYVRELT KFKKNEGALE
101: LLDWMEAHGA KLRLGHHALR LDLISKVRGI QAAEKYFWSL PDICNSVKTY SCLLNCYGKH GLAYKGLELY EKMKAKNIVP DKLVYNNLMV LYQKAGQPEK
201: ILSTFEEMRG SGVSANKFTY FTLIESYITM NDLDAAEKVL AELQKVAPVH WSLYTRMANN YIKLKLFGKA EIALKKAEEV MDKADLRSWY ALLSLHAHCG
301: NSTEVKRIWK SLKSTFKKCL SRSYLVMLQA LSMIDDFESL QQIFQEWQSS HEHYDTRIAN VMIKAYLDKG MIDEAEAIRQ STMAQGHCDE GMVYIFAEFY
401: LDKSDVNTAL EILRDANNMV TTHKWVPSKE LVSRFLKHYE ESKDVAGAES FLECLKKFEC LDPDAYEAMM QTYVVAGRTW DD

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.