Factsheet for TraesCS6B01G118900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G090800.2	Wheat	mitochondrion	96.88	83.61
TraesCS6B01G119000.1	Wheat	mitochondrion	84.86	73.7
HORVU6Hr1G016360.7	Barley	mitochondrion	87.98	73.2
TraesCS6B01G119100.1	Wheat	mitochondrion	72.36	60.81
TraesCS2B01G583500.1	Wheat	mitochondrion	57.93	50.21
VIT_07s0005g01630.t01	Wine grape	mitochondrion	36.78	32.42
KRH69203	Soybean	cytosol	29.57	31.62
PGSC0003DMT400023279	Potato	mitochondrion	37.5	31.52
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	36.3	30.32
TraesCS2B01G584000.2	Wheat	mitochondrion	39.66	29.84
AT4G01990.1	Thale cress	mitochondrion	34.86	28.88
Bra000902.1-P	Field mustard	mitochondrion	34.62	28.74
CDX90962	Canola	mitochondrion	34.62	28.74
CDY15237	Canola	mitochondrion	35.1	28.46
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	33.17	28.45
KRH31780	Soybean	mitochondrion	32.45	28.36
Bra033321.1-P	Field mustard	mitochondrion	35.1	28.35
CDX91822	Canola	mitochondrion	33.89	28.2
CDX89976	Canola	mitochondrion	34.62	27.96
Solyc01g100580.2.1	Tomato	mitochondrion	31.25	26.97
PGSC0003DMT400007271	Potato	mitochondrion	30.77	26.5
TraesCS1B01G188100.1	Wheat	mitochondrion	32.21	26.22
AT1G02370.1	Thale cress	mitochondrion	33.65	26.07
TraesCS2B01G410100.1	Wheat	plastid	30.53	25.0
TraesCS2B01G336200.1	Wheat	mitochondrion	22.84	22.67
TraesCS5B01G104900.1	Wheat	mitochondrion	26.44	21.57
TraesCS1B01G188200.1	Wheat	mitochondrion	25.48	21.54
TraesCS6B01G391300.1	Wheat	mitochondrion	24.52	19.77
TraesCS7B01G189100.1	Wheat	mitochondrion	18.75	15.2
TraesCS3B01G220600.2	Wheat	mitochondrion	21.88	14.85

Protein Annotations

EnsemblPlants:TraesCS6B01G118900.1	EnsemblPlantsGene:TraesCS6B01G118900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF942	PFAM:PF17177	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:113649703..113657605

Molecular Weight (calculated)

48130.2 Da

IEP (calculated)

6.938

GRAVY (calculated)

-0.304

Length

416 amino acids

Sequence
(BLAST)

001: MDEWLRQRLR LSQDQVLAYV RELTKFKKNE GALELLDWME AHGAKLRLGH HALRLDLISK VRGIQAAEEY FWSLPDICKS VKTYSCLLNC YGKHGLAYKG
101: LELYEKMKAK NIVPDKLVYN NLMILYQKAG QPEKIQSTFE EMRGSGVSAN KFTYFTLIES YITMNDLDAA EKVLAELQKV APVHWSLYTR MANNYIKLKL
201: FGKAEIALKK AEEVMDKADL CSWYALLSLH AHCGNSTEVK RIWKSLKSTF KKCLNRSYLV MLQALSMIDD FESLQQIFQE WQSSHEHYDT RIANVMIKAY
301: LDKGIIDEAE AIRQSTMAQG HCDEEMVYIF AEFYLDKSDV NTALEILRDA KNMVTAHKWV LSKELVSRFL KHYEESKDVA GAESFLECLK KLECLDPDAY
401: EAMMQTYVVA GRTRDD

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.