Factsheet for TraesCS1B01G188200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G166700.1	Wheat	mitochondrion	94.92	94.34
TraesCS1A01G168700.1	Wheat	mitochondrion	95.94	80.82
Os10t0501300-01	Rice	mitochondrion	62.4	59.84
Os10t0501000-01	Rice	cytosol	51.42	56.1
OQU91552	Sorghum	mitochondrion	57.52	55.49
Zm00001d032543_P001	Maize	mitochondrion	56.71	53.97
Os10t0501200-00	Rice	mitochondrion	61.99	48.72
GSMUA_Achr5P20750_001	Banana	mitochondrion	41.06	37.0
PGSC0003DMT400058755	Potato	cytosol	27.64	34.43
AT2G20710.1	Thale cress	mitochondrion	32.52	32.65
CDY39781	Canola	mitochondrion	31.5	32.43
Bra036673.1-P	Field mustard	mitochondrion	31.5	32.43
CDY03299	Canola	mitochondrion	31.1	32.35
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	32.93	32.34
PGSC0003DMT400047256	Potato	extracellular	21.14	32.2
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	29.67	32.16
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	31.1	32.01
Solyc07g054100.1.1	Tomato	cytosol	20.93	31.89
CDY35213	Canola	cytosol	2.64	31.71
KRH22399	Soybean	cytosol	28.66	29.62
KRH26940	Soybean	cytosol	29.67	29.44
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	29.27	29.21
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	29.47	29.12
TraesCS5B01G104900.1	Wheat	mitochondrion	30.08	29.02
TraesCS2B01G583500.1	Wheat	mitochondrion	27.64	28.33
TraesCS6B01G391300.1	Wheat	mitochondrion	29.67	28.29
TraesCS2B01G584000.2	Wheat	mitochondrion	31.5	28.03
CDY65573	Canola	mitochondrion	20.73	27.57
CDY35212	Canola	mitochondrion	15.65	27.4
Bra011054.1-P	Field mustard	mitochondrion	18.9	27.27
TraesCS2B01G410100.1	Wheat	plastid	27.85	26.97
TraesCS1B01G188100.1	Wheat	mitochondrion	27.24	26.22
TraesCS6B01G119000.1	Wheat	mitochondrion	25.2	25.89
TraesCS6B01G118900.1	Wheat	cytosol	21.54	25.48
TraesCS6B01G119100.1	Wheat	mitochondrion	25.61	25.45
AT1G43010.1	Thale cress	mitochondrion	13.21	25.29
AT1G28020.1	Thale cress	cytosol, plastid	24.8	24.7
CDY27645	Canola	mitochondrion	12.8	24.32
CDY00734	Canola	mitochondrion	8.74	24.29
CDY05786	Canola	plastid	23.37	23.71
Bra036496.1-P	Field mustard	plastid	23.37	23.71
CDY31943	Canola	plastid	22.97	23.3
CDY71968	Canola	plastid	13.41	22.6
TraesCS2B01G336200.1	Wheat	mitochondrion	18.5	21.72
AT3G11380.1	Thale cress	mitochondrion	23.78	21.63
TraesCS7B01G189100.1	Wheat	mitochondrion	21.54	20.66
Bra032862.1-P	Field mustard	mitochondrion	15.45	20.05
CDY48421	Canola	mitochondrion	16.67	19.85
CDY27647	Canola	mitochondrion	15.85	19.16
Bra032863.1-P	Field mustard	mitochondrion	15.45	19.0
AT3G11350.1	Thale cress	mitochondrion	13.82	18.94
TraesCS3B01G220600.2	Wheat	mitochondrion	23.58	18.92
AT1G28000.1	Thale cress	mitochondrion	14.43	18.3
AT2G20720.1	Thale cress	cytosol	10.57	17.39
CDY53325	Canola	mitochondrion	23.58	16.62
Bra032865.1-P	Field mustard	cytosol	19.31	16.55
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.19	15.89
CDY53324	Canola	mitochondrion, plastid	23.37	15.73
CDX73880	Canola	mitochondrion	14.63	14.37
CDY66759	Canola	cytosol	19.92	13.12
Bra032866.1-P	Field mustard	mitochondrion	16.06	12.38

Protein Annotations

EnsemblPlants:TraesCS1B01G188200.1	EnsemblPlantsGene:TraesCS1B01G188200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF625
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:336351219..336352772

Molecular Weight (calculated)

56015.9 Da

IEP (calculated)

8.202

GRAVY (calculated)

-0.244

Length

492 amino acids

Sequence
(BLAST)

001: MHRLLPPRGC LLRRLSTAAA ASPHPPRRPL ADSLYRRVTA VWNPRLPLTP VLEQWAVTEG RAVEKNSLMS IVKQLVRLRR FSHALELSMW MTDRRYMYLS
101: PGDVAYRLEL ISKVKGLESA VNYWKGLSIQ VKNSHCYGSL LKCYAEAKSV DEAEKLFAEM HDLGMMSSYP YNVMMKLYWE TGQVERVHAM YRAMEESSIK
201: PDVFSINILL TVLAAAGNFD GIEEIVKKVD PKIVNWHSHA IVARAFMEAG QQGKALRAIQ ESEKQIGRKD ERVAYGFLLS MFADLGMSSE ADRVWNVYKS
301: KVPVCNSMYM CRISGLLKMN DIDGAEKAFR EWESRYVHHD IQLTNLLLNA YCAKGLMEKA ETFLDEAIAK GRTPHRGTWY RLASGFFQDG QVSKAVDMTR
401: KALACASSRW EPDLTNVLMS LEHFMEQKNV EAAEEMASLL RNLVPLTRDV YHILLETYVH AGQPVSDLLD RMKKDGFEAD EETDKIIAGI CQ

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.