Factsheet for PGSC0003DMT400076352

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	88.49	93.17
PGSC0003DMT400058755	Potato	cytosol	54.6	66.08
PGSC0003DMT400047256	Potato	extracellular	22.38	33.13
OQU91552	Sorghum	mitochondrion	34.73	32.55
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	33.89	32.53
Zm00001d032543_P001	Maize	mitochondrion	34.52	31.91
Os10t0501300-01	Rice	mitochondrion	33.47	31.19
TraesCS1B01G188200.1	Wheat	mitochondrion	32.01	31.1
TraesCS1D01G166700.1	Wheat	mitochondrion	32.01	30.91
PGSC0003DMT400032340	Potato	mitochondrion	30.75	30.37
GSMUA_Achr5P20750_001	Banana	mitochondrion	34.52	30.22
Os10t0501000-01	Rice	cytosol	26.99	28.6
PGSC0003DMT400031020	Potato	cytosol	6.9	27.73
PGSC0003DMT400004477	Potato	plastid	27.82	27.65
PGSC0003DMT400092266	Potato	mitochondrion	10.67	27.57
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	27.82	27.09
PGSC0003DMT400080049	Potato	cytosol, plastid	30.75	26.97
TraesCS1A01G168700.1	Wheat	mitochondrion	32.64	26.71
PGSC0003DMT400002590	Potato	cytosol	27.41	26.63
PGSC0003DMT400023279	Potato	mitochondrion	27.2	26.26
PGSC0003DMT400011461	Potato	mitochondrion	21.76	26.0
Os10t0501200-00	Rice	mitochondrion	32.64	24.92
PGSC0003DMT400007271	Potato	mitochondrion	24.9	24.64
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	26.57	24.24
PGSC0003DMT400077284	Potato	mitochondrion	26.57	24.24
PGSC0003DMT400069375	Potato	cytosol	19.04	19.2
PGSC0003DMT400031016	Potato	cytosol	11.51	18.09
PGSC0003DMT400022632	Potato	mitochondrion	22.38	17.15
PGSC0003DMT400021596	Potato	mitochondrion	21.55	16.8

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102594985	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:IPR019734	UniProt:M1CWK5	PFAM:PF01535
PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400029687	PGSC:PGSC0003DMG400029687	EnsemblPlants:PGSC0003DMT400076352	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1625	InterPro:Pentatricopeptide_repeat	SMART:SM00028	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000296514E	RefSeq:XP_006347050.1	RefSeq:XP_015164149.1	SEG:seg	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029687]

Coordinates

chr2:-:34043254..34046583

Molecular Weight (calculated)

55466.1 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.414

Length

478 amino acids

Sequence
(BLAST)

001: MKQLSFSALR KQNPIHFQRT IINRFYGTTS TKQDKNQKRD WVFARIAPLG SPDVSMVPVL EQWVEEGKTV VKSELQWIIK RLNSYKRYKH ALEVSHWMTD
101: RRYYPLQPAD VAARINLMNK VKGLEEVEKY FNSIPQMLRR PEVYTALLNC YTNEKSVEKA EAIMQQLRDM GFAKGTLCYN HMMNLYYKTG TWEKMDNMMN
201: EMEQKGVNFD EFTLTIRLTA YAAAGDSEGM DKILAIMESD KQIILHWDTY SIAAELYLKV GQVEKALELL SKLESMILNH EKSNGAYNCL LKLYAEAGKK
301: EEVHRVWDLY KQNMRILNKG YITVMSALMK FGDTTEGVEK IFEEWESEAL SYDFRVPDVL IRSYCRNGLL EKAKALMDKG ISKGGVPWVT TWCHLANGYI
401: HEDLVPEAVE ALKKAISICP PNYKPSKETL ATCVKYWEKQ GNVDNAADFV RCLEQDHIFS PVFRDKLLCF IKEEKLQT

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.