Factsheet for PGSC0003DMT400021596

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022632	Potato	mitochondrion	56.28	55.29
KRH66764	Soybean	cytosol	36.22	53.49
KRH69049	Soybean	mitochondrion	51.22	51.56
KRH31614	Soybean	mitochondrion	50.08	51.17
VIT_08s0007g05090.t01	Wine grape	mitochondrion	51.71	50.8
GSMUA_Achr5P27560_001	Banana	cytosol	39.8	47.56
CDY39654	Canola	mitochondrion	46.17	47.09
GSMUA_Achr8P21680_001	Banana	mitochondrion	47.47	47.09
CDY57695	Canola	mitochondrion	45.84	46.6
KRG95098	Soybean	mitochondrion	46.17	46.39
AT1G80270.2	Thale cress	mitochondrion	45.02	46.31
AT1G15480.1	Thale cress	mitochondrion	42.41	43.77
Os12t0170100-01	Rice	mitochondrion	41.92	42.06
Os01t0280400-00	Rice	mitochondrion	41.92	42.06
TraesCS3D01G195000.1	Wheat	mitochondrion	41.6	41.6
TraesCS3B01G220600.2	Wheat	mitochondrion	41.44	41.44
TraesCS3A01G191200.1	Wheat	mitochondrion	41.27	41.34
HORVU3Hr1G040710.1	Barley	mitochondrion	40.95	41.01
OQU86720	Sorghum	mitochondrion	40.29	40.29
GSMUA_Achr11P...	Banana	mitochondrion	40.78	39.81
Zm00001d040475_P001	Maize	mitochondrion	39.8	39.8
AT3G15590.2	Thale cress	cytosol, mitochondrion	39.48	39.67
Bra027226.1-P	Field mustard	plastid	38.5	39.2
Bra003559.1-P	Field mustard	cytosol	45.51	39.19
Zm00001d008224_P002	Maize	mitochondrion	39.15	38.59
CDY30088	Canola	plastid	38.5	38.25
CDX97686	Canola	plastid	38.5	38.06
Bra026128.1-P	Field mustard	cytosol	46.17	30.4
CDX79395	Canola	cytosol	45.84	27.41
PGSC0003DMT400069375	Potato	cytosol	19.09	24.68
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	18.76	23.42
PGSC0003DMT400058755	Potato	cytosol	14.68	22.78
PGSC0003DMT400092266	Potato	mitochondrion	6.85	22.7
PGSC0003DMT400031020	Potato	cytosol	4.4	22.69
PGSC0003DMT400002590	Potato	cytosol	17.78	22.15
PGSC0003DMT400032340	Potato	mitochondrion	17.29	21.9
PGSC0003DMT400077284	Potato	mitochondrion	18.6	21.76
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	17.62	21.69
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	16.8	21.55
PGSC0003DMT400004477	Potato	plastid	16.48	21.0
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	17.94	20.99
PGSC0003DMT400031016	Potato	cytosol	10.28	20.72
PGSC0003DMT400023279	Potato	mitochondrion	16.64	20.61
PGSC0003DMT400047256	Potato	extracellular	10.77	20.43
PGSC0003DMT400080049	Potato	cytosol, plastid	17.46	19.63
PGSC0003DMT400011461	Potato	mitochondrion	12.56	19.25
PGSC0003DMT400007271	Potato	mitochondrion	14.68	18.63

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589958	MapMan:16.12.5.4.19	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	UniProt:M1AFD9	PFAM:PF13812	PFAM:PF17177	EnsemblPlantsGene:PGSC0003DMG400008375
PGSC:PGSC0003DMG400008375	EnsemblPlants:PGSC0003DMT400021596	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296DF80	RefSeq:XP_006362268.1	SEG:seg

Description

Pentatricopeptide repeat-containing protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400008375]

Coordinates

chr10:-:59243660..59247606

Molecular Weight (calculated)

70416.9 Da

IEP (calculated)

8.658

GRAVY (calculated)

-0.343

Length

613 amino acids

Sequence
(BLAST)

001: MWAIRRSSSS LKKQGFISRS SRIRCMMNKV TGRYSEGNSE GISNEISDQY LSFRGFCKTA HGSKLFLGWK KIFFSLVGTK SSSEIDSNLD DEFSELMGPT
101: VTKGMLEKNV EAELCKDDVD GEDVEMPHDK LELSDSESDA RQGESLREKV PMELLKAITA APVLSLDRVM DEWIEKGNDL TRTEITFIRI YLRRRHMYKR
201: ALQLFEWLEL KRQLIFTDKD YASHVDLIAK VHGIHKAETY VERVPKSFRS EVVYLSLLAN CAYKGYMKKS EEIFNKMRNL GFPLTSSVCS HLLLLYKKDK
301: KKIVDVLLLM KKENVKPTDI IYQILIDTKG QSNDIAGMEQ IIETMKAEGM EPKMYTKSII AKHYIFGGLV GKAENVLKQM EGEIEENHMV CRHLIALYAN
401: LKKVDDVRRI WQLCEPNARI IDCMTAIEAF GKLHKIEEAE AVFDKMSKEG KHLTSKHYYP LLCIYASHKM LAKGKDLVKR MSESGCPIGP LTWDGLIRLY
501: IKAGEVEKAD TILQEAAQHT YLKPKFTSYV AVMEEYAKRG EVHDTEKIFY KMRQAGYVCR IHQFQCLIQA YINAKAPCYG IADRMKADNV FPNRVLENML
601: LQSDPFKKTL LTC

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.