Factsheet for PGSC0003DMT400092266

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077284	Potato	mitochondrion	85.41	30.15
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	84.86	29.96
VIT_16s0039g02800.t01	Wine grape	cytosol	56.22	20.88
AT4G02820.1	Thale cress	mitochondrion	55.68	19.36
GSMUA_Achr1P17120_001	Banana	mitochondrion	52.97	18.85
Bra018528.1-P	Field mustard	mitochondrion	51.35	18.48
CDX97288	Canola	mitochondrion	50.81	18.29
CDX91277	Canola	mitochondrion	50.27	17.92
TraesCS5D01G112000.1	Wheat	mitochondrion	49.19	17.84
TraesCS5A01G099700.1	Wheat	mitochondrion	48.65	17.65
HORVU5Hr1G027150.1	Barley	mitochondrion	48.65	17.51
TraesCS5B01G104900.1	Wheat	mitochondrion	48.11	17.45
Os12t0527900-01	Rice	mitochondrion	48.11	17.32
Zm00001d023915_P001	Maize	mitochondrion	44.86	16.57
OQU79216	Sorghum	cytosol	45.95	15.48
PGSC0003DMT400011461	Potato	mitochondrion	32.97	15.25
PGSC0003DMT400023279	Potato	mitochondrion	34.05	12.73
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	31.89	11.85
PGSC0003DMT400080049	Potato	cytosol, plastid	33.51	11.38
PGSC0003DMT400032340	Potato	mitochondrion	28.65	10.95
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	27.57	10.67
PGSC0003DMT400004477	Potato	plastid	25.41	9.77
PGSC0003DMT400007271	Potato	mitochondrion	24.86	9.52
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	24.86	9.37
PGSC0003DMT400002590	Potato	cytosol	22.16	8.33
PGSC0003DMT400058755	Potato	cytosol	17.3	8.1
CDY36566	Canola	mitochondrion	25.41	7.82
PGSC0003DMT400022632	Potato	mitochondrion	23.78	7.05
PGSC0003DMT400021596	Potato	mitochondrion	22.7	6.85
PGSC0003DMT400069375	Potato	cytosol	17.3	6.75
PGSC0003DMT400031016	Potato	cytosol	7.57	4.61
PGSC0003DMT400031020	Potato	cytosol	1.08	1.68
PGSC0003DMT400047256	Potato	extracellular	2.16	1.24
CDY36565	Canola	cytosol	1.62	0.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400092266	EnsemblPlantsGene:PGSC0003DMG400041837	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935
PGSC:PGSC0003DMG400041837	TIGRFAMs:TIGR00756	UniParc:UPI000294D3C9	UniProt:M1DPF8	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400041837]

Coordinates

chr1:+:8509067..8510266

Molecular Weight (calculated)

20953.4 Da

IEP (calculated)

9.323

GRAVY (calculated)

-0.267

Length

185 amino acids

Sequence
(BLAST)

001: MLLSLVWRSY VVVRPLSTEA ATTMKSTRSG GGNGITTSLE SGTSIATSTR GIDTLGRRLL SLIYAKRSVV IVISKWKEEG HPVRKYELNH IVRELRKHKR
101: YKYALEVCEW MRVQDDIQLL SGDYAVHLDL IAKVHGMNNA EKFFEDLPDR LKVQTTCTAL LHTYVQHKDT AEAESLMEKM SDAVS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.