Factsheet for Bra018528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97288	Canola	mitochondrion	99.61	99.61
AT4G02820.1	Thale cress	mitochondrion	83.66	80.83
VIT_16s0039g02800.t01	Wine grape	cytosol	60.89	62.85
PGSC0003DMT400031020	Potato	cytosol	14.01	60.5
Solyc06g005140.2.1	Tomato	mitochondrion	57.39	56.73
PGSC0003DMT400077284	Potato	mitochondrion	57.39	56.3
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	55.64	54.58
GSMUA_Achr1P17120_001	Banana	mitochondrion	54.47	53.85
PGSC0003DMT400092266	Potato	mitochondrion	18.48	51.35
Os12t0527900-01	Rice	mitochondrion	49.03	49.03
TraesCS5D01G112000.1	Wheat	mitochondrion	47.08	47.45
TraesCS5A01G099700.1	Wheat	mitochondrion	47.08	47.45
Zm00001d023915_P001	Maize	mitochondrion	46.11	47.31
TraesCS5B01G104900.1	Wheat	mitochondrion	46.89	47.25
HORVU5Hr1G027150.1	Barley	mitochondrion	47.08	47.08
PGSC0003DMT400031016	Potato	cytosol	27.63	46.71
OQU79216	Sorghum	cytosol	47.47	44.44
Bra028632.1-P	Field mustard	mitochondrion	24.71	31.44
Bra036673.1-P	Field mustard	mitochondrion	28.79	30.96
Bra027131.1-P	Field mustard	mitochondrion	27.82	29.12
Bra036629.1-P	Field mustard	mitochondrion	26.65	28.72
Bra020588.1-P	Field mustard	mitochondrion	27.04	28.31
Bra011054.1-P	Field mustard	mitochondrion	18.68	28.15
Bra031484.1-P	Field mustard	mitochondrion	26.65	27.85
Bra033215.1-P	Field mustard	mitochondrion	27.43	27.54
Bra033321.1-P	Field mustard	mitochondrion	27.43	27.38
Bra038762.1-P	Field mustard	mitochondrion	25.88	27.25
Bra000902.1-P	Field mustard	mitochondrion	25.29	25.95
Bra032862.1-P	Field mustard	mitochondrion	16.73	22.69
Bra036496.1-P	Field mustard	plastid	20.23	21.44
Bra032863.1-P	Field mustard	mitochondrion	16.15	20.75
Bra031586.1-P	Field mustard	mitochondrion	20.62	19.96
Bra027226.1-P	Field mustard	plastid	21.01	17.94
Bra032865.1-P	Field mustard	cytosol	19.46	17.42
Bra003559.1-P	Field mustard	cytosol	23.74	17.13
Bra001400.1-P	Field mustard	mitochondrion, plastid	24.51	16.82
Bra026128.1-P	Field mustard	cytosol	23.15	12.78
Bra032866.1-P	Field mustard	mitochondrion	15.56	12.54

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra018528	EnsemblPlants:Bra018528.1	EnsemblPlants:Bra018528.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DPT7	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF935	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002547319	SEG:seg	:	:

Description

AT4G02820 (E=1e-222) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:-:9000051..9001663

Molecular Weight (calculated)

58628.1 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.346

Length

514 amino acids

Sequence
(BLAST)

001: MNLSIFLRRT RATVASLCRV FSAATAETTE SGALVGGGRD TLGGRLLRLT YTKRSAVVSI RKWKEEGHTV GKYELNRIVR ELRKIKRYKH ALEICEWMVV
101: QEDIKLQPGD YAVHLDLISK IRGLNSAEKF FQDMPDQMRD HAACTSLLHT YVKNKLSDKA EALFERMAEC GFLKSSCLPY NHMLSMYISN GQFEKVPEII
201: KELKSKTSPD IVTYNLWMTA FASRNDVEAA EKVYLKVKKE ANLSPDWVTY SVLTNLYAKT GNLDKAKLAL KEMEKLVSKR HRVAYASLIS LHGNLGDKDG
301: VDSTWKMIKS SFNKMNDAEY LSMISSLLKL GDFEQAKGLY DEWESVSGTR DARIPNLILA EYMNRAEETH LGDKFYERMV EKGINPSYST FEILTWGYLK
401: RKDMDKVLDC FGKAIDAVKK WTVNVRLLKA VCKELEEQGH VKGAEKLMAI LQKVGHVNTQ LYNSLLRTYA KAGEMALIVE ERMAKDNVEM DEETKELIRL
501: TSLMRVTEFS TTIS

Best Arabidopsis Sequence Match ( AT4G02820.1 )
(BLAST)

001: MNKNMLVRSA RPTLASIHRL FSAAAAATVD TATAPVVKPR SGGGKGGESA NKKETVVGGR DTLGGRLLSL VYTKRSAVVT IRKWKEEGHS VRKYELNRIV
101: RELRKIKRYK HALEICEWMV VQEDIKLQAG DYAVHLDLIS KIRGLNSAEK FFEDMPDQMR GHAACTSLLH SYVQNKLSDK AEALFEKMGE CGFLKSCLPY
201: NHMLSMYISR GQFEKVPVLI KELKIRTSPD IVTYNLWLTA FASGNDVEGA EKVYLKAKEE KLNPDWVTYS VLTNLYAKTD NVEKARLALK EMEKLVSKKN
301: RVAYASLISL HANLGDKDGV NLTWKKVKSS FKKMNDAEYL SMISAVVKLG EFEQAKGLYD EWESVSGTGD ARIPNLILAE YMNRDEVLLG EKFYERIVEK
401: GINPSYSTWE ILTWAYLKRK DMEKVLDCFG KAIDSVKKWT VNVRLVKGAC KELEEQGNVK GAEKLMTLLQ KAGYVNTQLY NSLLRTYAKA GEMALIVEER
501: MAKDNVELDE ETKELIRLTS QMRVTEISST IS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g02820, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SY07]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.