Factsheet for Bra032865.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032866.1-P	Field mustard	mitochondrion	76.66	68.97
AT1G28020.1	Thale cress	cytosol, plastid	43.73	50.81
Bra001400.1-P	Field mustard	mitochondrion, plastid	48.78	37.38
Bra011054.1-P	Field mustard	mitochondrion	17.07	28.74
Bra032862.1-P	Field mustard	mitochondrion	16.38	24.8
Bra032863.1-P	Field mustard	mitochondrion	16.55	23.75
Bra036673.1-P	Field mustard	mitochondrion	19.69	23.64
Bra038762.1-P	Field mustard	mitochondrion	19.16	22.54
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	19.16	22.04
Solyc07g054100.1.1	Tomato	cytosol	11.85	21.05
OQU91552	Sorghum	mitochondrion	18.64	20.98
KRH22399	Soybean	cytosol	17.07	20.59
KRH26940	Soybean	cytosol	17.77	20.56
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	17.77	20.48
PGSC0003DMT400047256	Potato	extracellular	11.5	20.43
Zm00001d032543_P001	Maize	mitochondrion	18.29	20.31
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	17.42	20.28
GSMUA_Achr5P20750_001	Banana	mitochondrion	18.82	19.78
Os10t0501000-01	Rice	cytosol	15.33	19.51
Bra018528.1-P	Field mustard	mitochondrion	17.42	19.46
TraesCS1B01G188200.1	Wheat	mitochondrion	16.55	19.31
Os10t0501300-01	Rice	mitochondrion	17.25	19.3
Bra000902.1-P	Field mustard	mitochondrion	16.72	19.16
TraesCS1D01G166700.1	Wheat	mitochondrion	16.38	18.99
Bra036496.1-P	Field mustard	plastid	15.85	18.76
Bra033215.1-P	Field mustard	mitochondrion	16.72	18.75
Bra036629.1-P	Field mustard	mitochondrion	15.51	18.66
Bra020588.1-P	Field mustard	mitochondrion	15.51	18.13
Bra028632.1-P	Field mustard	mitochondrion	12.54	17.82
Bra027131.1-P	Field mustard	mitochondrion	15.16	17.72
Bra033321.1-P	Field mustard	mitochondrion	15.51	17.28
Bra031484.1-P	Field mustard	mitochondrion	14.81	17.28
TraesCS1A01G168700.1	Wheat	mitochondrion	16.9	16.61
Os10t0501200-00	Rice	mitochondrion	17.94	16.45
Bra031586.1-P	Field mustard	mitochondrion	13.07	14.12
Bra027226.1-P	Field mustard	plastid	14.81	14.12
Bra003559.1-P	Field mustard	cytosol	13.41	10.81
Bra026128.1-P	Field mustard	cytosol	14.63	9.02

Protein Annotations

EnsemblPlants:Bra032865.1	EnsemblPlants:Bra032865.1-P	EnsemblPlantsGene:Bra032865	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002542523
UniProt:M4EVN2	MapMan:35.1	:	:	:	:

Description

AT1G28020 (E=2e-081) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:12314714..12316992

Molecular Weight (calculated)

66347.1 Da

IEP (calculated)

5.454

GRAVY (calculated)

-0.476

Length

574 amino acids

Sequence
(BLAST)

001: MQKIIPVLQQ WRQQGNQIDP SHVRVIIKKL RESDQALQVS EWMLDNVVGL EEAEKCFESI PHSARDGSFY TSLLTLYKRS DKTLCKAEAT FKKMRELGLL
101: TSPSPYNAMM SLYGALNNRD KADELFREMQ GSQEEAIKLL TLTEKLLVDP KSFKQAYELL TKLYGEAEKK EEVLRIWNLC NENTEPYCDN NDYLTVVRSL
201: LKLDAITEAE EIYKVWEYLP LEFDIRIPTA LASGYRERGM VDEAEKLMKS LIKNIRMKRP INPLLDQWGS RMRVSELKCL IKNLHDSNQF SKALQVSEWM
301: DEKRACNIYA EDYAVRLHMV DVVLGLEEAE KFFKNIPENM KDYTVYATLL SSYTKSDKHL GKAKATFEKM RELGLLMKPS PFNSMFSFHS QRNMVEEFLR
401: EMEENNVAPD SLMVNKVLRI YAADSNVEAM ETFMKKWSGE EGIKLERETM AAVAKAYSKA GSIEQAIEMY GGLEGSKKEV YRLWNECKKK EKEKLEDGWL
501: SLGNECMTNE KLEDYWYKTV IASLLKLDDV EGAEKVYGEW KPVGPNLDLR IPGLLISRFC AESNKLKVGE LINL

Best Arabidopsis Sequence Match ( AT1G28020.1 )
(BLAST)

001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.