Factsheet for Solyc07g054090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	93.91	92.97
Solyc07g054100.1.1	Tomato	cytosol	56.59	86.38
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	43.61	43.09
CDY35213	Canola	cytosol	3.45	41.46
KRH22399	Soybean	cytosol	37.32	38.66
AT2G20710.1	Thale cress	mitochondrion	37.53	37.76
KRH26940	Soybean	cytosol	37.93	37.7
CDY39781	Canola	mitochondrion	36.11	37.24
CDY03299	Canola	mitochondrion	35.7	37.21
Bra036673.1-P	Field mustard	mitochondrion	35.9	37.03
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	32.25	35.02
CDY27645	Canola	mitochondrion	16.02	30.5
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	30.22	30.35
Os10t0501300-01	Rice	mitochondrion	31.24	30.02
CDY65573	Canola	mitochondrion	22.31	29.73
Bra011054.1-P	Field mustard	mitochondrion	20.49	29.62
OQU91552	Sorghum	mitochondrion	30.63	29.61
TraesCS1B01G188200.1	Wheat	mitochondrion	29.21	29.27
GSMUA_Achr5P20750_001	Banana	mitochondrion	32.25	29.12
TraesCS1D01G166700.1	Wheat	mitochondrion	29.01	28.89
Os10t0501000-01	Rice	cytosol	25.76	28.16
AT1G28020.1	Thale cress	cytosol, plastid	28.19	28.14
Zm00001d032543_P001	Maize	mitochondrion	29.21	27.85
CDY35212	Canola	mitochondrion	15.82	27.76
Solyc07g063220.2.1	Tomato	plastid	30.83	27.39
Solyc06g005140.2.1	Tomato	mitochondrion	28.6	27.12
Solyc11g006380.1.1	Tomato	cytosol	26.98	27.03
Solyc10g047370.1.1	Tomato	mitochondrion	21.5	26.57
Solyc01g089870.2.1	Tomato	nucleus	29.21	26.42
CDY71968	Canola	plastid	15.62	26.37
Solyc01g100580.2.1	Tomato	mitochondrion	25.56	26.14
AT1G43010.1	Thale cress	mitochondrion	13.59	26.07
Bra032862.1-P	Field mustard	mitochondrion	19.88	25.86
TraesCS1A01G168700.1	Wheat	mitochondrion	29.61	25.0
Bra032863.1-P	Field mustard	mitochondrion	20.28	25.0
Os10t0501200-00	Rice	mitochondrion	31.64	24.92
Solyc01g081320.2.1	Tomato	plastid	25.96	24.71
CDY27647	Canola	mitochondrion	20.28	24.57
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	24.14	24.54
CDY31943	Canola	plastid	24.14	24.54
Bra036496.1-P	Field mustard	plastid	24.14	24.54
CDY05786	Canola	plastid	24.14	24.54
AT1G28000.1	Thale cress	mitochondrion	19.27	24.48
CDY48421	Canola	mitochondrion	19.88	23.73
AT3G11380.1	Thale cress	mitochondrion	24.75	22.55
AT2G20720.1	Thale cress	cytosol	13.39	22.07
CDY00734	Canola	mitochondrion	7.3	20.34
AT3G11350.1	Thale cress	mitochondrion	14.81	20.33
Solyc12g020050.1.1	Tomato	plastid	23.12	18.27
CDY53325	Canola	mitochondrion	25.15	17.77
Solyc06g071900.2.1	Tomato	mitochondrion	19.27	17.76
Bra001400.1-P	Field mustard	mitochondrion, plastid	26.77	17.62
Bra032865.1-P	Field mustard	cytosol	20.28	17.42
CDY53324	Canola	mitochondrion, plastid	25.56	17.24
CDX73880	Canola	mitochondrion	15.82	15.57
CDY66759	Canola	cytosol	21.1	13.92
Bra032866.1-P	Field mustard	mitochondrion	15.82	12.23

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4CFV4	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc07g054090.2	EnsemblPlants:Solyc07g054090.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276C213	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:62493362..62498012

Molecular Weight (calculated)

56544.2 Da

IEP (calculated)

8.266

GRAVY (calculated)

-0.423

Length

493 amino acids

Sequence
(BLAST)

001: MVKLVQQSWW KFSTCFLRVS SSSYSTNTET LASLFLPDKD EQASPKNALN SRLLYLTRSK DSVISVLDKW VTEQNPIKYE DLQIIVRQFR AYRRYNHALQ
101: VFEWIKKSKD FDISPRDFAV ELDLVSKAHG LEAAETYFTS IPDDLRTYQV YGALLNCYAN AMVIKKAEDT MQKLKELAYA GTVAYNVMMT LYAKLGYLEK
201: LQSLMLEMED KGVSGDMISY SILLNAYASV PDVREMEKVL MKMEADPLLI NWNPYTVVAK GYLKAGDIEK ANESLKKCEY RLKGKREKLG IDMLITLYTS
301: MGNKDDVYRI WNKYKQKVKR HNSSYHCMIR GLEKLDDLDG AEKIFAEWET NRVHFDIRIP NLLISAYCKK GHMEKAISLI GQLEASGKHP NGSSWNRLAL
401: GYCVQNDMDK AVETMKKAIL ASKPGWKPHF HSLASCVKYL QSKGDTQGEE ELKDLLRVRG LCSKEFEGGL DKYIEIGNRK SEALNETDLE ETC

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.