CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032862.1-P	Field mustard	mitochondrion	94.98	64.91
CDY27647	Canola	mitochondrion	81.47	51.84
CDY48421	Canola	mitochondrion	82.24	51.57
AT1G28000.1	Thale cress	mitochondrion	63.32	42.27
CDY35212	Canola	mitochondrion	38.61	35.59
CDY00734	Canola	mitochondrion	22.01	32.2
CDY71968	Canola	plastid	33.59	29.79
CDY65573	Canola	mitochondrion	37.84	26.49
CDY50357	Canola	mitochondrion	18.15	23.5
CDY24553	Canola	mitochondrion	21.24	19.1
CDY39781	Canola	mitochondrion	32.82	17.78
CDX73880	Canola	mitochondrion	33.59	17.37
CDY03299	Canola	mitochondrion	31.66	17.34
CDY44801	Canola	mitochondrion	26.25	16.83
CDY31943	Canola	plastid	30.5	16.29
CDY05786	Canola	plastid	30.5	16.29
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	31.27	16.27
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	30.5	16.02
Os10t0501000-01	Rice	cytosol	25.48	14.63
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	27.8	14.43
KRH26940	Soybean	cytosol	27.41	14.31
CDY53325	Canola	mitochondrion	38.22	14.18
KRH22399	Soybean	cytosol	25.87	14.08
CDY53324	Canola	mitochondrion, plastid	39.0	13.82
CDX97288	Canola	mitochondrion	27.03	13.62
CDX91277	Canola	mitochondrion	27.03	13.49
CDX90079	Canola	mitochondrion	26.64	13.48
CDY15126	Canola	cytosol, mitochondrion, plastid	26.25	13.28
Os10t0501300-01	Rice	mitochondrion	26.25	13.26
CDX98698	Canola	mitochondrion	24.71	13.11
OQU91552	Sorghum	mitochondrion	25.48	12.94
TraesCS1B01G188200.1	Wheat	mitochondrion	24.32	12.8
Zm00001d032543_P001	Maize	mitochondrion	25.48	12.77
GSMUA_Achr5P20750_001	Banana	mitochondrion	25.87	12.27
CDY19721	Canola	mitochondrion	22.39	12.16
TraesCS1D01G166700.1	Wheat	mitochondrion	23.17	12.12
CDX99984	Canola	mitochondrion	21.62	11.72
CDY25035	Canola	mitochondrion, plastid	21.62	11.43
CDX96239	Canola	mitochondrion	21.62	11.41
Os10t0501200-00	Rice	mitochondrion	27.41	11.34
CDY46999	Canola	mitochondrion	21.24	11.2
CDY34141	Canola	mitochondrion	21.24	11.18
CDY15237	Canola	mitochondrion	21.62	10.92
CDY05574	Canola	mitochondrion	22.01	10.88
CDX89976	Canola	mitochondrion	21.62	10.87
TraesCS1A01G168700.1	Wheat	mitochondrion	24.32	10.79
CDX91822	Canola	mitochondrion	19.69	10.2
CDX90962	Canola	mitochondrion	19.3	9.98
CDY36566	Canola	mitochondrion	22.39	9.65
CDY39654	Canola	mitochondrion	22.39	9.65
CDY66759	Canola	cytosol	27.41	9.5
CDY57695	Canola	mitochondrion	22.01	9.45
CDX94049	Canola	cytosol	25.1	9.26
CDY09903	Canola	mitochondrion	17.76	8.68
CDY06272	Canola	mitochondrion	17.37	8.49
CDX97686	Canola	plastid	19.3	8.06
PGSC0003DMT400047256	Potato	extracellular	10.04	8.05
Solyc07g054100.1.1	Tomato	cytosol	10.04	8.05
CDY30088	Canola	plastid	18.53	7.78
CDX79395	Canola	cytosol	22.01	5.56
CDY36565	Canola	cytosol	0.39	0.3
CDY24554	Canola	cytosol	0.0	0.0
CDY50358	Canola	cytosol	0.0	0.0
CDY35213	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY27645	EnsemblPlantsGene:GSBRNA2T00038404001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	ProteinID:CDY27645	ProteinID:CDY27645.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EDC426
UniProt:A0A078GM63	MapMan:35.1	:	:	:	:

Description

BnaA09g27620DBnaA09g27620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM63]

Coordinates

chrLK032207:-:518224..519092

Molecular Weight (calculated)

30054.3 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.381

Length

259 amino acids

Sequence
(BLAST)

001: MMQSLGRHSK RFLLFGKTQP IQFLRTVTSA NLNDTLHSRV MAVEKRFLRR VKVTPVLDEW LKQGNETNPT DLRAVINALC QSQRFDHALQ VSEWITKRGV
101: FELSTEDFAS RLYLIEINSG LSEAEKLFKS IPENMKNDSV YTTLLSFYTK SKKTRHKAEA TYEKMKEKDL LFIPNPYYEM ISLYGLLGET NMVDEVLRQM
201: EENEVVHDKT LTENNVLKAY ASVPADVEAM EKLFLKRIED ETLPFVLAWQ TGISMQRLT

Best Arabidopsis Sequence Match ( AT1G28000.1 )
(BLAST)

001: MKCLGRYAIK NLLSRRLPSI RFAGTLTSPK LNETSHSRIM ALGREQKKVT PPLDEWLKRG KDLNPAVLRG LINSLCESQR FNHALQVSEW ITKRGIFDLS
101: TEDFASRLCL VEISTGLKEA EKFFKSIPEN MRDDSVHTTL LSLYTISKKT RHEAEATYQT MRVQNMLLKP YPYYSMIYLY ALLGEKNMID EILRQMKENG
201: VEHDKNLTAN NVLKAYASLP DVEAMEMFLM GLEVEEPRFS LAWQTGISIA KAYLKGGSSR KAVEMLRRTE LVVDTKSKDS ANKVLMMMYW DAGAKQDASR
301: LSRLIYPKSK KGKRMKAYDE KIESYGGDSS DPIIFIDNRR DCGSVGDGDG DVDVDVDVDV DDGFSGSSDG GASCGGGGCG GGGCGGGD

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.