CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00734	Canola	mitochondrion	18.19	71.75
AT3G11380.1	Thale cress	mitochondrion	47.85	61.74
CDY71968	Canola	plastid	23.78	56.85
CDY53324	Canola	mitochondrion, plastid	57.74	55.13
CDX73880	Canola	mitochondrion	38.54	53.69
CDY66759	Canola	cytosol	52.87	49.4
CDY35213	Canola	cytosol	2.87	48.78
CDY65573	Canola	mitochondrion	22.06	41.62
CDY35212	Canola	mitochondrion	16.48	40.93
CDY27645	Canola	mitochondrion	14.18	38.22
CDY48421	Canola	mitochondrion	18.19	30.75
CDY27647	Canola	mitochondrion	17.77	30.47
CDY03299	Canola	mitochondrion	19.77	29.18
CDY39781	Canola	mitochondrion	19.91	29.08
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	19.48	27.25
CDX98698	Canola	mitochondrion	18.19	26.02
CDY50357	Canola	mitochondrion	7.31	25.5
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	17.77	25.15
Solyc07g054100.1.1	Tomato	cytosol	11.6	25.08
PGSC0003DMT400047256	Potato	extracellular	11.6	25.08
CDY44801	Canola	mitochondrion	14.47	25.0
CDY24553	Canola	mitochondrion	10.32	25.0
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	17.62	24.7
GSMUA_Achr5P20750_001	Banana	mitochondrion	19.2	24.54
Zm00001d032543_P001	Maize	mitochondrion	17.91	24.18
OQU91552	Sorghum	mitochondrion	17.48	23.92
TraesCS1B01G188200.1	Wheat	mitochondrion	16.62	23.58
KRH22399	Soybean	cytosol	16.05	23.53
Os10t0501000-01	Rice	cytosol	15.19	23.5
TraesCS1D01G166700.1	Wheat	mitochondrion	16.62	23.43
CDX97288	Canola	mitochondrion	17.19	23.35
CDY05786	Canola	plastid	16.19	23.3
Os10t0501300-01	Rice	mitochondrion	16.91	23.0
KRH26940	Soybean	cytosol	16.33	22.98
CDX91277	Canola	mitochondrion	17.05	22.93
CDY31943	Canola	plastid	15.9	22.89
CDY34141	Canola	mitochondrion	15.9	22.56
CDY15126	Canola	cytosol, mitochondrion, plastid	16.48	22.46
CDY46999	Canola	mitochondrion	15.76	22.4
CDX90079	Canola	mitochondrion	16.19	22.07
CDX96239	Canola	mitochondrion	15.47	22.0
CDX90962	Canola	mitochondrion	15.19	21.16
CDX91822	Canola	mitochondrion	15.04	21.0
CDX99984	Canola	mitochondrion	14.18	20.71
CDY19721	Canola	mitochondrion	14.04	20.55
CDY50358	Canola	cytosol	6.88	20.43
TraesCS1A01G168700.1	Wheat	mitochondrion	16.76	20.03
CDY25035	Canola	mitochondrion, plastid	14.04	20.0
Os10t0501200-00	Rice	mitochondrion	16.76	18.69
CDY15237	Canola	mitochondrion	13.61	18.52
CDX89976	Canola	mitochondrion	13.47	18.25
CDY05574	Canola	mitochondrion	13.61	18.13
CDX94049	Canola	cytosol	17.91	17.81
CDY24554	Canola	cytosol	3.87	17.65
CDY09903	Canola	mitochondrion	13.04	17.17
CDY06272	Canola	mitochondrion	12.75	16.79
CDY39654	Canola	mitochondrion	14.04	16.31
CDX97686	Canola	plastid	14.47	16.29
CDY36566	Canola	mitochondrion	13.9	16.14
CDY30088	Canola	plastid	14.04	15.88
CDY57695	Canola	mitochondrion	13.04	15.09
CDX79395	Canola	cytosol	13.18	8.98
CDY36565	Canola	cytosol	0.29	0.6

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:A0A078IQC4	UniProt:A0A078IQC4	EnsemblPlants:CDY53325	ProteinID:CDY53325
ProteinID:CDY53325.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00010445001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEAD38	SEG:seg	:	:

Description

BnaCnng24870DBnaCnng24870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQC4]

Coordinates

chrLK033187:-:68843..71308

Molecular Weight (calculated)

79421.1 Da

IEP (calculated)

7.694

GRAVY (calculated)

-0.343

Length

698 amino acids

Sequence
(BLAST)

001: MISLQQQARR FLAHSSNARL FCSNTNRTIW ASNQTLQSRI ESALNQKAKI STVLEQWRQQ GNKLNPSLVR GIFEKLRDSK RYPQALEVSQ WMAERKICSL
101: VPEDYAARFD LVESVLGLEE AEKFLEKVPE NLKGESMYTS LLKSYAKSGK RSLGRAEAAF KKMRELGLLL KPSPYSSMTS LYSSIGNRGK VDEILREMKD
201: NNVKLDSLTL NNVLRVYAAE SDVASMEKLL EGSEEAASTL QLRTVLDMAK AYLRLMRLYG EAGKCSEDIY RIWNLYKKTG KQNSEGFLAL LGSLLNLDDT
301: KGAAEMYYKE YECSGLEFDV RIPNTLVSGF RKKGMVRKAD NLMNKTLRNK MLADKEIAPL LEEWGKPSEL RDLIKNLKDS NQFSKALEAS SWLCGQKAIN
401: LFPEDYADRL DLTEKVLGLK EADNFFNTSI PENMKSFSVY STLLNSYTRS HQNIDKAEAI FEKMGELGFL TKLSPFKSMI SLYSVLGKPA EIENLLRKMK
501: EKNIEPDSVT MNNVLRVNAY VSAVDLMDEH KSQWVDDGEL KLEVETMEAM AAAYEKAGSI LKAVEITTSK QEVYRLRDMI GEMGNEEYLS VIRSLSKLGD
601: VQGAQEMYGE WEQVKGVEFD ARIPGLLISR YCQVEGDEMK ARQMLNSSRQ KVNETEFKLF MKDMGLTLLF IPVVMSVIWL CTTFPPIIFM LMLGYFLP

Best Arabidopsis Sequence Match ( AT3G11380.1 )
(BLAST)

001: MSMRHNLQRH AKRILAYSNR PRFFCSYTNV TLSSPATNQT LQSRIEAASH QKAEITTVLE QWLQQQQQQG KQLNPSLLRG IVEKLRSSNR PRQALEVSDW
101: MVEQKMYNLP EDFSARFHLT EKVLNLEEAE KFFESIPENM RFESMYNSLL RSYARQSGEK ALKKAESVFK KMKKLGLLLR PSPYNSMTSL YSSLGNRDKV
201: DEILREMKEN NVELDNVTVN NALRVYAAVS DVATMDKFLA DRKEITRLDG LTMLAMAKAY ELMSLYGEAG EIEDVHRVWD KYKATRQKDN EEFRTLIGSL
301: LKLGDTKGAE KIYYNEWECS GLEFDNRIPD MLVSGYREKG MVMKADKLVN KTLWIRGLAT PITLLLEEMD KKGNKVSPPG LRDLIKNLRD SNQLSKALEA
401: STWMCQKKVF NLFSEDYATR LHLTEKVLGL EEAENFFESS IPENMKDYSV YDTLLSCYAR SSNTQSKAEA VFEKMRELGL QSKLSPFNSL ISLYSGQGKL
501: SVVNILLCDM KHKNIEPDIV TRNNVLRANA YILAIDSMEK V

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.